Strain Fitness in Marinobacter adhaerens HP15 around HP15_2051

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2050 and HP15_2051 are separated by 62 nucleotidesHP15_2051 and HP15_2052 are separated by 192 nucleotides HP15_2050: HP15_2050 - bifunctional GMP synthase/glutamine amidotransferase protein, at 2,148,356 to 2,149,933 _2050 HP15_2051: HP15_2051 - inositol-5-monophosphate dehydrogenase, at 2,149,996 to 2,151,459 _2051 HP15_2052: HP15_2052 - exodeoxyribonuclease VII large subunit, at 2,151,652 to 2,153,040 _2052 Position (kb) 2149 2150 2151 2152Strain fitness (log2 ratio) -2 -1 0 1at 2151.572 kb on + strandat 2151.654 kb on + strandat 2151.673 kb on - strandat 2151.673 kb on - strandat 2151.779 kb on - strandat 2151.785 kb on - strandat 2151.870 kb on + strand, within HP15_2052at 2151.878 kb on - strand, within HP15_2052at 2152.008 kb on - strand, within HP15_2052at 2152.069 kb on - strand, within HP15_2052at 2152.071 kb on + strand, within HP15_2052at 2152.084 kb on + strand, within HP15_2052at 2152.194 kb on + strand, within HP15_2052at 2152.266 kb on - strand, within HP15_2052at 2152.318 kb on - strand, within HP15_2052at 2152.408 kb on - strand, within HP15_2052

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,151,572 + -1.3
2,151,654 + -0.4
2,151,673 - +1.7
2,151,673 - +1.0
2,151,779 - -0.2
2,151,785 - +0.8
2,151,870 + HP15_2052 0.16 +1.4
2,151,878 - HP15_2052 0.16 +0.5
2,152,008 - HP15_2052 0.26 +0.1
2,152,069 - HP15_2052 0.30 +1.4
2,152,071 + HP15_2052 0.30 -0.8
2,152,084 + HP15_2052 0.31 -1.9
2,152,194 + HP15_2052 0.39 -0.3
2,152,266 - HP15_2052 0.44 +1.0
2,152,318 - HP15_2052 0.48 +0.9
2,152,408 - HP15_2052 0.54 -0.7

Or see this region's nucleotide sequence