Strain Fitness in Marinobacter adhaerens HP15 around HP15_2023

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2021 and HP15_2022 are separated by 277 nucleotidesHP15_2022 and HP15_2023 are separated by 60 nucleotidesHP15_2023 and HP15_2024 are separated by 28 nucleotidesHP15_2024 and HP15_2025 are separated by 32 nucleotides HP15_2021: HP15_2021 - membrane protein containing DUF606, at 2,122,791 to 2,123,255 _2021 HP15_2022: HP15_2022 - lipocalin family protein, at 2,123,533 to 2,124,072 _2022 HP15_2023: HP15_2023 - UDP-glucuronic acid epimerase, at 2,124,133 to 2,125,140 _2023 HP15_2024: HP15_2024 - conserved hypothetical protein, secreted, at 2,125,169 to 2,125,906 _2024 HP15_2025: HP15_2025 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 2,125,939 to 2,126,652 _2025 Position (kb) 2124 2125 2126Strain fitness (log2 ratio) -2 -1 0 1at 2123.191 kb on + strand, within HP15_2021at 2123.243 kb on - strandat 2123.251 kb on + strandat 2123.369 kb on + strandat 2123.431 kb on + strandat 2123.621 kb on - strand, within HP15_2022at 2123.634 kb on + strand, within HP15_2022at 2123.642 kb on - strand, within HP15_2022at 2123.647 kb on - strand, within HP15_2022at 2123.671 kb on + strand, within HP15_2022at 2123.679 kb on - strand, within HP15_2022at 2123.679 kb on - strand, within HP15_2022at 2123.776 kb on + strand, within HP15_2022at 2123.837 kb on + strand, within HP15_2022at 2123.881 kb on + strand, within HP15_2022at 2123.889 kb on - strand, within HP15_2022at 2123.988 kb on + strand, within HP15_2022at 2125.463 kb on - strand, within HP15_2024at 2125.512 kb on - strand, within HP15_2024at 2125.667 kb on - strand, within HP15_2024at 2125.704 kb on + strand, within HP15_2024at 2125.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,123,191 + HP15_2021 0.86 -1.5
2,123,243 - +0.7
2,123,251 + -1.4
2,123,369 + -0.7
2,123,431 + +1.3
2,123,621 - HP15_2022 0.16 +1.5
2,123,634 + HP15_2022 0.19 -0.7
2,123,642 - HP15_2022 0.20 -0.6
2,123,647 - HP15_2022 0.21 -0.8
2,123,671 + HP15_2022 0.26 +1.4
2,123,679 - HP15_2022 0.27 +1.0
2,123,679 - HP15_2022 0.27 +0.7
2,123,776 + HP15_2022 0.45 +0.2
2,123,837 + HP15_2022 0.56 +0.7
2,123,881 + HP15_2022 0.64 -0.0
2,123,889 - HP15_2022 0.66 -2.1
2,123,988 + HP15_2022 0.84 +0.6
2,125,463 - HP15_2024 0.40 +0.3
2,125,512 - HP15_2024 0.46 +0.4
2,125,667 - HP15_2024 0.67 -0.3
2,125,704 + HP15_2024 0.72 -1.2
2,125,843 - +0.4

Or see this region's nucleotide sequence