Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1882 and HP15_1883 are separated by 31 nucleotides HP15_1883 and HP15_1884 are separated by 31 nucleotides HP15_1884 and HP15_1885 are separated by 3 nucleotides HP15_1885 and HP15_1886 are separated by 348 nucleotides
HP15_1882: HP15_1882 - ribonuclease D, at 1,986,276 to 1,987,433
_1882
HP15_1883: HP15_1883 - recombination protein RecR, at 1,987,465 to 1,988,067
_1883
HP15_1884: HP15_1884 - protein belonging to uncharacterized protein family UPF0133, at 1,988,099 to 1,988,422
_1884
HP15_1885: HP15_1885 - DNA polymerase III subunits gamma and tau, at 1,988,426 to 1,990,378
_1885
HP15_1886: HP15_1886 - oxidoreductase, 2OG-Fe(II) oxygenase family protein, at 1,990,727 to 1,991,482
_1886
Position (kb) 1988
1989
1990
1991 Strain fitness (log2 ratio) -1
0
1 at 1987.606 kb on - strand, within HP15_1883 at 1988.098 kb on - strand at 1988.136 kb on - strand, within HP15_1884 at 1990.412 kb on - strand at 1990.468 kb on + strand at 1990.981 kb on + strand, within HP15_1886 at 1990.981 kb on + strand, within HP15_1886 at 1990.989 kb on - strand, within HP15_1886 at 1990.989 kb on - strand, within HP15_1886 at 1990.989 kb on - strand, within HP15_1886 at 1990.991 kb on + strand, within HP15_1886 at 1991.048 kb on - strand, within HP15_1886 at 1991.185 kb on + strand, within HP15_1886 at 1991.301 kb on - strand, within HP15_1886 at 1991.325 kb on + strand, within HP15_1886 at 1991.331 kb on - strand, within HP15_1886
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 1,987,606 - HP15_1883 0.23 +0.3 1,988,098 - +0.4 1,988,136 - HP15_1884 0.11 +1.0 1,990,412 - +1.1 1,990,468 + +0.9 1,990,981 + HP15_1886 0.34 +0.1 1,990,981 + HP15_1886 0.34 +1.4 1,990,989 - HP15_1886 0.35 -1.2 1,990,989 - HP15_1886 0.35 -0.6 1,990,989 - HP15_1886 0.35 -0.6 1,990,991 + HP15_1886 0.35 -0.9 1,991,048 - HP15_1886 0.42 -0.3 1,991,185 + HP15_1886 0.61 +0.8 1,991,301 - HP15_1886 0.76 -0.4 1,991,325 + HP15_1886 0.79 +0.0 1,991,331 - HP15_1886 0.80 +0.4
Or see this region's nucleotide sequence