Strain Fitness in Marinobacter adhaerens HP15 around HP15_1820

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1819 and HP15_1820 are separated by 6 nucleotidesHP15_1820 and HP15_1821 are separated by 26 nucleotides HP15_1819: HP15_1819 - DNA translocase FtsK, at 1,914,002 to 1,916,584 _1819 HP15_1820: HP15_1820 - methionine gamma-lyase, at 1,916,591 to 1,917,832 _1820 HP15_1821: HP15_1821 - amidophosphoribosyltransferase, at 1,917,859 to 1,919,385 _1821 Position (kb) 1916 1917 1918Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1917.026 kb on + strand, within HP15_1820at 1917.027 kb on - strand, within HP15_1820at 1917.095 kb on + strand, within HP15_1820at 1917.147 kb on + strand, within HP15_1820at 1917.205 kb on + strand, within HP15_1820at 1917.213 kb on - strand, within HP15_1820at 1917.497 kb on + strand, within HP15_1820at 1917.604 kb on - strand, within HP15_1820at 1917.673 kb on - strand, within HP15_1820at 1917.680 kb on + strand, within HP15_1820at 1917.688 kb on - strand, within HP15_1820at 1917.735 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,917,026 + HP15_1820 0.35 -2.2
1,917,027 - HP15_1820 0.35 -4.6
1,917,095 + HP15_1820 0.41 -3.7
1,917,147 + HP15_1820 0.45 -3.0
1,917,205 + HP15_1820 0.49 -4.2
1,917,213 - HP15_1820 0.50 -2.2
1,917,497 + HP15_1820 0.73 -5.8
1,917,604 - HP15_1820 0.82 -3.3
1,917,673 - HP15_1820 0.87 -4.7
1,917,680 + HP15_1820 0.88 -5.1
1,917,688 - HP15_1820 0.88 -2.9
1,917,735 + -2.8

Or see this region's nucleotide sequence