Strain Fitness in Marinobacter adhaerens HP15 around HP15_1811

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1810 and HP15_1811 are separated by 65 nucleotidesHP15_1811 and HP15_1812 are separated by 71 nucleotidesHP15_1812 and HP15_1813 overlap by 14 nucleotides HP15_1810: HP15_1810 - peptide ABC transporter, ATP-binding protein, at 1,903,729 to 1,905,333 _1810 HP15_1811: HP15_1811 - short-chain dehydrogenase/reductase SDR, at 1,905,399 to 1,906,184 _1811 HP15_1812: HP15_1812 - type IV pilus assembly PilZ, at 1,906,256 to 1,906,699 _1812 HP15_1813: HP15_1813 - conserved hypothetical protein, at 1,906,686 to 1,908,479 _1813 Position (kb) 1905 1906 1907Strain fitness (log2 ratio) -1 0 1at 1904.464 kb on - strand, within HP15_1810at 1904.482 kb on - strand, within HP15_1810at 1904.730 kb on + strand, within HP15_1810at 1904.766 kb on - strand, within HP15_1810at 1905.039 kb on - strand, within HP15_1810at 1905.122 kb on - strand, within HP15_1810at 1905.122 kb on - strand, within HP15_1810at 1905.124 kb on + strand, within HP15_1810at 1905.127 kb on - strand, within HP15_1810at 1906.262 kb on - strandat 1906.335 kb on - strand, within HP15_1812at 1906.594 kb on - strand, within HP15_1812at 1906.759 kb on + strandat 1906.826 kb on - strandat 1906.831 kb on - strandat 1906.972 kb on + strand, within HP15_1813

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,904,464 - HP15_1810 0.46 -0.3
1,904,482 - HP15_1810 0.47 +0.4
1,904,730 + HP15_1810 0.62 +1.4
1,904,766 - HP15_1810 0.65 -1.7
1,905,039 - HP15_1810 0.82 +1.0
1,905,122 - HP15_1810 0.87 -0.4
1,905,122 - HP15_1810 0.87 +0.3
1,905,124 + HP15_1810 0.87 -0.5
1,905,127 - HP15_1810 0.87 +0.6
1,906,262 - -0.8
1,906,335 - HP15_1812 0.18 -0.2
1,906,594 - HP15_1812 0.76 -0.0
1,906,759 + +0.5
1,906,826 - +0.0
1,906,831 - +1.2
1,906,972 + HP15_1813 0.16 -0.7

Or see this region's nucleotide sequence