Strain Fitness in Marinobacter adhaerens HP15 around HP15_1782

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1779 and HP15_1780 are separated by 4 nucleotidesHP15_1780 and HP15_1781 are separated by 97 nucleotidesHP15_1781 and HP15_1782 are separated by 37 nucleotidesHP15_1782 and HP15_1783 are separated by 29 nucleotidesHP15_1783 and HP15_tRNA34 are separated by 138 nucleotidesHP15_tRNA34 and HP15_1784 are separated by 211 nucleotides HP15_1779: HP15_1779 - protein of unknown function, YeeE/YedE, at 1,875,120 to 1,875,557 _1779 HP15_1780: HP15_1780 - protein of unknown function, YeeE/YedE, at 1,875,562 to 1,875,987 _1780 HP15_1781: HP15_1781 - beta-lactamase hydrolase-like protein, at 1,876,085 to 1,876,516 _1781 HP15_1782: HP15_1782 - ferrochelatase, at 1,876,554 to 1,877,663 _1782 HP15_1783: HP15_1783 - hypothetical protein, at 1,877,693 to 1,877,911 _1783 HP15_tRNA34: HP15_tRNA34 - tRNA-Ser, at 1,878,050 to 1,878,140 _tRNA34 HP15_1784: HP15_1784 - protein belonging to uncharacterized protein family UPF0005, at 1,878,352 to 1,879,050 _1784 Position (kb) 1876 1877 1878Strain fitness (log2 ratio) -2 -1 0 1at 1875.611 kb on + strand, within HP15_1780at 1875.731 kb on + strand, within HP15_1780at 1875.852 kb on - strand, within HP15_1780at 1875.872 kb on + strand, within HP15_1780at 1875.872 kb on + strand, within HP15_1780at 1876.026 kb on + strandat 1876.196 kb on + strand, within HP15_1781at 1876.398 kb on - strand, within HP15_1781at 1876.559 kb on + strandat 1877.794 kb on + strand, within HP15_1783at 1877.802 kb on - strand, within HP15_1783at 1877.833 kb on - strand, within HP15_1783at 1877.920 kb on + strandat 1877.955 kb on - strandat 1878.220 kb on - strandat 1878.464 kb on + strand, within HP15_1784at 1878.464 kb on + strand, within HP15_1784at 1878.472 kb on - strand, within HP15_1784

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,875,611 + HP15_1780 0.12 -0.2
1,875,731 + HP15_1780 0.40 -1.0
1,875,852 - HP15_1780 0.68 +0.0
1,875,872 + HP15_1780 0.73 -0.6
1,875,872 + HP15_1780 0.73 -1.1
1,876,026 + +1.4
1,876,196 + HP15_1781 0.26 -1.9
1,876,398 - HP15_1781 0.72 -1.6
1,876,559 + -0.6
1,877,794 + HP15_1783 0.46 +0.5
1,877,802 - HP15_1783 0.50 -2.7
1,877,833 - HP15_1783 0.64 +0.8
1,877,920 + +0.1
1,877,955 - -0.0
1,878,220 - -0.5
1,878,464 + HP15_1784 0.16 +0.8
1,878,464 + HP15_1784 0.16 +0.7
1,878,472 - HP15_1784 0.17 -0.5

Or see this region's nucleotide sequence