Strain Fitness in Marinobacter adhaerens HP15 around HP15_1577

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1576 and HP15_1577 are separated by 404 nucleotidesHP15_1577 and HP15_1578 overlap by 18 nucleotides HP15_1576: HP15_1576 - GTP-binding protein, at 1,660,072 to 1,662,720 _1576 HP15_1577: HP15_1577 - hypothetical protein, at 1,663,125 to 1,663,325 _1577 HP15_1578: HP15_1578 - type I restriction-modification system, methyltransferase subunit, at 1,663,308 to 1,665,731 _1578 Position (kb) 1663 1664Strain fitness (log2 ratio) -2 -1 0 1at 1662.336 kb on + strand, within HP15_1576at 1662.343 kb on - strand, within HP15_1576at 1662.393 kb on + strand, within HP15_1576at 1662.472 kb on + strandat 1662.480 kb on - strandat 1662.492 kb on - strandat 1662.529 kb on - strandat 1662.552 kb on + strandat 1662.739 kb on + strandat 1662.749 kb on + strandat 1662.779 kb on - strandat 1662.835 kb on - strandat 1662.916 kb on + strandat 1662.936 kb on - strandat 1663.063 kb on + strandat 1663.106 kb on - strandat 1663.141 kb on - strandat 1663.333 kb on - strandat 1663.377 kb on + strandat 1663.402 kb on + strandat 1663.412 kb on + strandat 1663.430 kb on - strandat 1663.525 kb on - strandat 1663.525 kb on - strandat 1663.571 kb on - strand, within HP15_1578at 1663.830 kb on - strand, within HP15_1578at 1663.847 kb on - strand, within HP15_1578at 1663.901 kb on + strand, within HP15_1578at 1664.149 kb on + strand, within HP15_1578at 1664.167 kb on - strand, within HP15_1578at 1664.170 kb on + strand, within HP15_1578at 1664.178 kb on - strand, within HP15_1578at 1664.178 kb on - strand, within HP15_1578at 1664.318 kb on + strand, within HP15_1578

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,662,336 + HP15_1576 0.85 -0.6
1,662,343 - HP15_1576 0.86 -0.3
1,662,393 + HP15_1576 0.88 +0.1
1,662,472 + -2.1
1,662,480 - -0.4
1,662,492 - -1.8
1,662,529 - +0.5
1,662,552 + +0.9
1,662,739 + +0.4
1,662,749 + -0.7
1,662,779 - -0.6
1,662,835 - -0.5
1,662,916 + -0.7
1,662,936 - -0.6
1,663,063 + -0.3
1,663,106 - -1.0
1,663,141 - +1.0
1,663,333 - -0.6
1,663,377 + +0.4
1,663,402 + +0.7
1,663,412 + +1.0
1,663,430 - +0.5
1,663,525 - -1.8
1,663,525 - -0.5
1,663,571 - HP15_1578 0.11 +0.0
1,663,830 - HP15_1578 0.22 +1.2
1,663,847 - HP15_1578 0.22 +1.0
1,663,901 + HP15_1578 0.24 -1.3
1,664,149 + HP15_1578 0.35 -0.1
1,664,167 - HP15_1578 0.35 +0.2
1,664,170 + HP15_1578 0.36 -0.4
1,664,178 - HP15_1578 0.36 +1.3
1,664,178 - HP15_1578 0.36 -0.5
1,664,318 + HP15_1578 0.42 -0.9

Or see this region's nucleotide sequence