Strain Fitness in Marinobacter adhaerens HP15 around HP15_1299

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1297 and HP15_1298 are separated by 72 nucleotidesHP15_1298 and HP15_1299 overlap by 4 nucleotidesHP15_1299 and HP15_1300 are separated by 330 nucleotides HP15_1297: HP15_1297 - conserved hypothetical protein, secreted, at 1,357,800 to 1,358,552 _1297 HP15_1298: HP15_1298 - phosphoribosylglycinamide formyltransferase, at 1,358,625 to 1,359,287 _1298 HP15_1299: HP15_1299 - phosphoribosylaminoimidazole synthetase, at 1,359,284 to 1,360,414 _1299 HP15_1300: HP15_1300 - conserved hypothetical protein, at 1,360,745 to 1,361,845 _1300 Position (kb) 1359 1360 1361Strain fitness (log2 ratio) -2 -1 0 1at 1358.338 kb on + strand, within HP15_1297at 1358.599 kb on - strandat 1358.733 kb on - strand, within HP15_1298at 1358.902 kb on + strand, within HP15_1298at 1358.939 kb on + strand, within HP15_1298at 1359.112 kb on + strand, within HP15_1298at 1359.150 kb on + strand, within HP15_1298at 1359.278 kb on - strandat 1360.360 kb on - strandat 1360.360 kb on - strandat 1360.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,358,338 + HP15_1297 0.71 +0.2
1,358,599 - -1.1
1,358,733 - HP15_1298 0.16 -0.8
1,358,902 + HP15_1298 0.42 -0.9
1,358,939 + HP15_1298 0.47 -1.0
1,359,112 + HP15_1298 0.73 -0.1
1,359,150 + HP15_1298 0.79 -2.0
1,359,278 - -1.3
1,360,360 - +0.6
1,360,360 - -2.3
1,360,393 - +0.5

Or see this region's nucleotide sequence