Strain Fitness in Marinobacter adhaerens HP15 around HP15_1277

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1275 and HP15_1276 are separated by 6 nucleotidesHP15_1276 and HP15_1277 are separated by 26 nucleotidesHP15_1277 and HP15_1278 overlap by 4 nucleotides HP15_1275: HP15_1275 - septum formation initiator, at 1,337,372 to 1,337,623 _1275 HP15_1276: HP15_1276 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,337,630 to 1,338,331 _1276 HP15_1277: HP15_1277 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,338,358 to 1,338,837 _1277 HP15_1278: HP15_1278 - pseudouridylate synthase, at 1,338,834 to 1,339,883 _1278 Position (kb) 1338 1339Strain fitness (log2 ratio) -2 -1 0 1at 1337.626 kb on + strandat 1338.333 kb on - strandat 1338.882 kb on - strandat 1338.901 kb on - strandat 1338.932 kb on + strandat 1338.955 kb on - strand, within HP15_1278at 1339.262 kb on - strand, within HP15_1278at 1339.267 kb on + strand, within HP15_1278at 1339.293 kb on - strand, within HP15_1278at 1339.295 kb on + strand, within HP15_1278at 1339.359 kb on - strand, within HP15_1278at 1339.394 kb on - strand, within HP15_1278at 1339.394 kb on - strand, within HP15_1278at 1339.419 kb on + strand, within HP15_1278at 1339.432 kb on - strand, within HP15_1278

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,337,626 + -2.1
1,338,333 - -0.3
1,338,882 - +0.2
1,338,901 - -0.2
1,338,932 + -0.5
1,338,955 - HP15_1278 0.12 +0.7
1,339,262 - HP15_1278 0.41 +1.1
1,339,267 + HP15_1278 0.41 +1.1
1,339,293 - HP15_1278 0.44 +0.9
1,339,295 + HP15_1278 0.44 -0.7
1,339,359 - HP15_1278 0.50 -0.7
1,339,394 - HP15_1278 0.53 -0.4
1,339,394 - HP15_1278 0.53 -1.1
1,339,419 + HP15_1278 0.56 -0.2
1,339,432 - HP15_1278 0.57 -1.6

Or see this region's nucleotide sequence