Strain Fitness in Marinobacter adhaerens HP15 around HP15_1227

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1225 and HP15_1226 are separated by 57 nucleotidesHP15_1226 and HP15_1227 overlap by 11 nucleotidesHP15_1227 and HP15_1228 are separated by 11 nucleotides HP15_1225: HP15_1225 - oxidoreductase, short chain dehydrogenase/reductase family, at 1,273,733 to 1,274,482 _1225 HP15_1226: HP15_1226 - 2-phosphoglycolate phosphatase, prokaryotic, at 1,274,540 to 1,275,211 _1226 HP15_1227: HP15_1227 - 3-demethylubiquinone-9 3-methyltransferase, at 1,275,201 to 1,275,941 _1227 HP15_1228: HP15_1228 - chlorohydrolase/deaminase family protein, at 1,275,953 to 1,277,290 _1228 Position (kb) 1275 1276Strain fitness (log2 ratio) -2 -1 0 1at 1274.270 kb on - strand, within HP15_1225at 1274.390 kb on - strand, within HP15_1225at 1274.484 kb on + strandat 1274.486 kb on - strandat 1275.206 kb on - strandat 1275.916 kb on - strandat 1275.936 kb on - strandat 1275.984 kb on - strandat 1276.158 kb on - strand, within HP15_1228at 1276.158 kb on - strand, within HP15_1228at 1276.311 kb on + strand, within HP15_1228at 1276.396 kb on + strand, within HP15_1228at 1276.405 kb on - strand, within HP15_1228at 1276.416 kb on - strand, within HP15_1228at 1276.700 kb on - strand, within HP15_1228at 1276.700 kb on - strand, within HP15_1228at 1276.827 kb on - strand, within HP15_1228

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,274,270 - HP15_1225 0.72 +0.2
1,274,390 - HP15_1225 0.88 -0.7
1,274,484 + -1.5
1,274,486 - -1.5
1,275,206 - -0.2
1,275,916 - +0.3
1,275,936 - +0.2
1,275,984 - +1.0
1,276,158 - HP15_1228 0.15 -0.1
1,276,158 - HP15_1228 0.15 +0.3
1,276,311 + HP15_1228 0.27 -1.7
1,276,396 + HP15_1228 0.33 -1.3
1,276,405 - HP15_1228 0.34 -0.9
1,276,416 - HP15_1228 0.35 -1.9
1,276,700 - HP15_1228 0.56 -0.3
1,276,700 - HP15_1228 0.56 -0.8
1,276,827 - HP15_1228 0.65 +0.0

Or see this region's nucleotide sequence