Strain Fitness in Marinobacter adhaerens HP15 around HP15_1174

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1173 and HP15_1174 are separated by 89 nucleotidesHP15_1174 and HP15_1175 are separated by 3 nucleotidesHP15_1175 and HP15_1176 are separated by 47 nucleotides HP15_1173: HP15_1173 - membrane-associated zinc metalloprotease, at 1,205,147 to 1,206,496 _1173 HP15_1174: HP15_1174 - outer membrane protein, bacterial surface antigen family, at 1,206,586 to 1,208,859 _1174 HP15_1175: HP15_1175 - outer membrane chaperone Skp (OmpH), at 1,208,863 to 1,209,402 _1175 HP15_1176: HP15_1176 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, at 1,209,450 to 1,210,475 _1176 Position (kb) 1206 1207 1208 1209Strain fitness (log2 ratio) -1 0 1at 1205.680 kb on - strand, within HP15_1173at 1205.757 kb on + strand, within HP15_1173at 1205.816 kb on - strand, within HP15_1173at 1206.122 kb on + strand, within HP15_1173at 1209.106 kb on + strand, within HP15_1175at 1209.261 kb on + strand, within HP15_1175

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,205,680 - HP15_1173 0.39 +0.3
1,205,757 + HP15_1173 0.45 -0.9
1,205,816 - HP15_1173 0.50 +0.9
1,206,122 + HP15_1173 0.72 -0.1
1,209,106 + HP15_1175 0.45 -0.5
1,209,261 + HP15_1175 0.74 -1.7

Or see this region's nucleotide sequence