Strain Fitness in Marinobacter adhaerens HP15 around HP15_1160

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1159 and HP15_1160 overlap by 14 nucleotidesHP15_1160 and HP15_1161 are separated by 87 nucleotidesHP15_1161 and HP15_1162 overlap by 4 nucleotides HP15_1159: HP15_1159 - succinyl-diaminopimelate desuccinylase, at 1,191,502 to 1,192,638 _1159 HP15_1160: HP15_1160 - tetrahydrodipicolinate succinylase, at 1,192,625 to 1,193,653 _1160 HP15_1161: HP15_1161 - arsenate reductase, at 1,193,741 to 1,194,082 _1161 HP15_1162: HP15_1162 - aminotransferase, class I and II, at 1,194,079 to 1,195,281 _1162 Position (kb) 1192 1193 1194Strain fitness (log2 ratio) -3 -2 -1 0 1at 1193.767 kb on - strandat 1193.856 kb on - strand, within HP15_1161at 1193.893 kb on - strand, within HP15_1161at 1193.920 kb on + strand, within HP15_1161at 1193.972 kb on + strand, within HP15_1161at 1194.237 kb on + strand, within HP15_1162at 1194.582 kb on - strand, within HP15_1162at 1194.636 kb on + strand, within HP15_1162

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
remove
1,193,767 - -0.4
1,193,856 - HP15_1161 0.34 -0.7
1,193,893 - HP15_1161 0.44 -3.1
1,193,920 + HP15_1161 0.52 -1.5
1,193,972 + HP15_1161 0.68 -0.9
1,194,237 + HP15_1162 0.13 -0.8
1,194,582 - HP15_1162 0.42 +0.1
1,194,636 + HP15_1162 0.46 +0.8

Or see this region's nucleotide sequence