Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1076 and HP15_1077 are separated by 3 nucleotides HP15_1077 and HP15_1078 overlap by 20 nucleotides HP15_1078 and HP15_1079 are separated by 66 nucleotides HP15_1079 and HP15_1080 are separated by 127 nucleotides
HP15_1076: HP15_1076 - phenylalanyl-tRNA synthetase beta subunit, at 1,105,048 to 1,107,420
_1076
HP15_1077: HP15_1077 - integration host factor, alpha subunit, at 1,107,424 to 1,107,726
_1077
HP15_1078: HP15_1078 - transcriptional regulator, MerR family protein, at 1,107,707 to 1,108,072
_1078
HP15_1079: HP15_1079 - conserved hypothetical protein, membrane, at 1,108,139 to 1,108,315
_1079
HP15_1080: HP15_1080 - transcriptional Regulator, Crp/Fnr family protein, at 1,108,443 to 1,109,078
_1080
Position (kb)
1107
1108
1109 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1107.762 kb on - strand, within HP15_1078 at 1107.939 kb on - strand, within HP15_1078 at 1108.040 kb on + strand at 1108.041 kb on + strand at 1108.193 kb on - strand, within HP15_1079 at 1108.347 kb on + strand at 1108.480 kb on - strand at 1108.603 kb on + strand, within HP15_1080 at 1108.603 kb on + strand, within HP15_1080 at 1108.611 kb on - strand, within HP15_1080 at 1108.670 kb on + strand, within HP15_1080 at 1108.732 kb on - strand, within HP15_1080 at 1108.853 kb on - strand, within HP15_1080 at 1108.870 kb on - strand, within HP15_1080 at 1108.880 kb on - strand, within HP15_1080 at 1108.968 kb on - strand, within HP15_1080 at 1108.973 kb on - strand, within HP15_1080
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 1,107,762 - HP15_1078 0.15 +2.6 1,107,939 - HP15_1078 0.63 +3.3 1,108,040 + -0.5 1,108,041 + -0.1 1,108,193 - HP15_1079 0.31 -1.2 1,108,347 + +0.0 1,108,480 - -1.2 1,108,603 + HP15_1080 0.25 -0.2 1,108,603 + HP15_1080 0.25 -1.1 1,108,611 - HP15_1080 0.26 -0.7 1,108,670 + HP15_1080 0.36 +1.4 1,108,732 - HP15_1080 0.45 -0.6 1,108,853 - HP15_1080 0.64 -0.0 1,108,870 - HP15_1080 0.67 -0.1 1,108,880 - HP15_1080 0.69 -0.9 1,108,968 - HP15_1080 0.83 +1.3 1,108,973 - HP15_1080 0.83 -1.1
Or see this region's nucleotide sequence