Strain Fitness in Marinobacter adhaerens HP15 around HP15_1077

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1076 and HP15_1077 are separated by 3 nucleotidesHP15_1077 and HP15_1078 overlap by 20 nucleotidesHP15_1078 and HP15_1079 are separated by 66 nucleotidesHP15_1079 and HP15_1080 are separated by 127 nucleotides HP15_1076: HP15_1076 - phenylalanyl-tRNA synthetase beta subunit, at 1,105,048 to 1,107,420 _1076 HP15_1077: HP15_1077 - integration host factor, alpha subunit, at 1,107,424 to 1,107,726 _1077 HP15_1078: HP15_1078 - transcriptional regulator, MerR family protein, at 1,107,707 to 1,108,072 _1078 HP15_1079: HP15_1079 - conserved hypothetical protein, membrane, at 1,108,139 to 1,108,315 _1079 HP15_1080: HP15_1080 - transcriptional Regulator, Crp/Fnr family protein, at 1,108,443 to 1,109,078 _1080 Position (kb) 1107 1108Strain fitness (log2 ratio) -1 0 1 2 3at 1107.762 kb on - strand, within HP15_1078at 1107.939 kb on - strand, within HP15_1078at 1108.040 kb on + strandat 1108.041 kb on + strandat 1108.193 kb on - strand, within HP15_1079at 1108.347 kb on + strandat 1108.480 kb on - strandat 1108.603 kb on + strand, within HP15_1080at 1108.603 kb on + strand, within HP15_1080at 1108.611 kb on - strand, within HP15_1080at 1108.670 kb on + strand, within HP15_1080

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,107,762 - HP15_1078 0.15 +2.6
1,107,939 - HP15_1078 0.63 +3.3
1,108,040 + -0.5
1,108,041 + -0.1
1,108,193 - HP15_1079 0.31 -1.2
1,108,347 + +0.0
1,108,480 - -1.2
1,108,603 + HP15_1080 0.25 -0.2
1,108,603 + HP15_1080 0.25 -1.1
1,108,611 - HP15_1080 0.26 -0.7
1,108,670 + HP15_1080 0.36 +1.4

Or see this region's nucleotide sequence