Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_990 and HP15_992 are separated by 21 nucleotides HP15_992 and HP15_991 are separated by 18 nucleotides HP15_991 and HP15_993 are separated by 36 nucleotides
HP15_990: HP15_990 - taurine catabolism dioxygenase TauD/TfdA, at 998,872 to 999,963
_990
HP15_992: HP15_992 - hypothetical protein, at 999,985 to 1,000,125
_992
HP15_991: HP15_991 - substrate-binding region of ABC-type glycine betaine transport system, at 1,000,144 to 1,001,061
_991
HP15_993: HP15_993 - binding-protein-dependent transport systems inner membrane component, at 1,001,098 to 1,002,252
_993
Position (kb) 999
1000
1001 Strain fitness (log2 ratio) -1
0
1
2 at 998.990 kb on - strand, within HP15_990 at 999.035 kb on - strand, within HP15_990 at 999.233 kb on - strand, within HP15_990 at 999.233 kb on - strand, within HP15_990 at 999.233 kb on - strand, within HP15_990 at 999.237 kb on + strand, within HP15_990 at 999.242 kb on + strand, within HP15_990 at 999.295 kb on + strand, within HP15_990 at 999.311 kb on + strand, within HP15_990 at 999.329 kb on - strand, within HP15_990 at 999.366 kb on + strand, within HP15_990 at 999.460 kb on - strand, within HP15_990 at 999.597 kb on + strand, within HP15_990 at 999.597 kb on + strand, within HP15_990 at 999.605 kb on - strand, within HP15_990 at 999.605 kb on - strand, within HP15_990 at 999.641 kb on - strand, within HP15_990 at 999.643 kb on - strand, within HP15_990 at 999.860 kb on - strand at 999.892 kb on + strand at 999.900 kb on - strand at 999.906 kb on + strand at 999.930 kb on + strand at 999.944 kb on + strand at 1000.136 kb on + strand at 1000.286 kb on + strand, within HP15_991 at 1000.487 kb on - strand, within HP15_991 at 1000.536 kb on + strand, within HP15_991 at 1000.621 kb on + strand, within HP15_991 at 1000.621 kb on + strand, within HP15_991 at 1000.629 kb on - strand, within HP15_991 at 1000.648 kb on - strand, within HP15_991 at 1000.688 kb on - strand, within HP15_991 at 1000.726 kb on - strand, within HP15_991 at 1000.872 kb on + strand, within HP15_991 at 1000.880 kb on - strand, within HP15_991 at 1001.050 kb on + strand at 1001.086 kb on - strand at 1001.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 998,990 - HP15_990 0.11 -0.7 999,035 - HP15_990 0.15 +0.6 999,233 - HP15_990 0.33 -0.9 999,233 - HP15_990 0.33 +0.6 999,233 - HP15_990 0.33 -1.1 999,237 + HP15_990 0.33 +0.6 999,242 + HP15_990 0.34 -1.5 999,295 + HP15_990 0.39 +1.0 999,311 + HP15_990 0.40 -0.7 999,329 - HP15_990 0.42 +0.4 999,366 + HP15_990 0.45 +0.9 999,460 - HP15_990 0.54 -1.0 999,597 + HP15_990 0.66 -0.6 999,597 + HP15_990 0.66 -1.0 999,605 - HP15_990 0.67 +2.4 999,605 - HP15_990 0.67 +0.3 999,641 - HP15_990 0.70 +1.3 999,643 - HP15_990 0.71 -0.4 999,860 - +0.3 999,892 + -1.1 999,900 - +1.0 999,906 + +0.1 999,930 + -0.9 999,944 + +1.2 1,000,136 + -1.2 1,000,286 + HP15_991 0.15 -0.3 1,000,487 - HP15_991 0.37 +0.9 1,000,536 + HP15_991 0.43 +0.3 1,000,621 + HP15_991 0.52 -0.6 1,000,621 + HP15_991 0.52 +1.2 1,000,629 - HP15_991 0.53 -0.4 1,000,648 - HP15_991 0.55 -0.4 1,000,688 - HP15_991 0.59 -0.5 1,000,726 - HP15_991 0.63 -0.8 1,000,872 + HP15_991 0.79 +0.3 1,000,880 - HP15_991 0.80 -0.3 1,001,050 + -1.0 1,001,086 - +0.8 1,001,086 - -0.3
Or see this region's nucleotide sequence