Experiment: LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13500 and BWI76_RS13505 are separated by 263 nucleotides BWI76_RS13505 and BWI76_RS13510 are separated by 171 nucleotides BWI76_RS13510 and BWI76_RS13515 are separated by 49 nucleotides
BWI76_RS13500: BWI76_RS13500 - TonB-dependent receptor, at 2,813,604 to 2,815,715
_RS13500
BWI76_RS13505: BWI76_RS13505 - putative receptor, at 2,815,979 to 2,817,040
_RS13505
BWI76_RS13510: BWI76_RS13510 - YgdI/YgdR family lipoprotein, at 2,817,212 to 2,817,433
_RS13510
BWI76_RS13515: BWI76_RS13515 - amino acid permease, at 2,817,483 to 2,818,940
_RS13515
Position (kb)
2815
2816
2817
2818 Strain fitness (log2 ratio)
-1
0
1 at 2814.993 kb on - strand, within BWI76_RS13500 at 2814.993 kb on - strand, within BWI76_RS13500 at 2815.604 kb on + strand at 2815.626 kb on - strand at 2815.628 kb on + strand at 2816.143 kb on + strand, within BWI76_RS13505 at 2816.197 kb on - strand, within BWI76_RS13505 at 2816.249 kb on - strand, within BWI76_RS13505 at 2816.276 kb on + strand, within BWI76_RS13505 at 2816.490 kb on + strand, within BWI76_RS13505 at 2816.516 kb on + strand, within BWI76_RS13505 at 2816.838 kb on + strand at 2816.894 kb on - strand, within BWI76_RS13505 at 2816.938 kb on - strand at 2817.004 kb on + strand at 2817.049 kb on + strand at 2817.161 kb on - strand at 2817.188 kb on - strand at 2817.800 kb on - strand, within BWI76_RS13515 at 2817.956 kb on - strand, within BWI76_RS13515 at 2817.964 kb on + strand, within BWI76_RS13515
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 2,814,993 - BWI76_RS13500 0.66 -0.0 2,814,993 - BWI76_RS13500 0.66 -0.6 2,815,604 + -0.2 2,815,626 - -0.0 2,815,628 + +0.4 2,816,143 + BWI76_RS13505 0.15 +0.1 2,816,197 - BWI76_RS13505 0.21 -0.6 2,816,249 - BWI76_RS13505 0.25 -1.0 2,816,276 + BWI76_RS13505 0.28 +0.2 2,816,490 + BWI76_RS13505 0.48 -0.9 2,816,516 + BWI76_RS13505 0.51 -1.3 2,816,838 + +1.7 2,816,894 - BWI76_RS13505 0.86 -0.5 2,816,938 - -0.2 2,817,004 + -0.8 2,817,049 + -0.1 2,817,161 - -1.0 2,817,188 - +0.7 2,817,800 - BWI76_RS13515 0.22 +0.7 2,817,956 - BWI76_RS13515 0.32 +0.2 2,817,964 + BWI76_RS13515 0.33 -0.2
Or see this region's nucleotide sequence