Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23160

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23155 and RR42_RS23160 are separated by 11 nucleotidesRR42_RS23160 and RR42_RS23165 are separated by 100 nucleotides RR42_RS23155: RR42_RS23155 - acyl-CoA dehydrogenase, at 526,903 to 528,084 _RS23155 RR42_RS23160: RR42_RS23160 - AMP-dependent synthetase, at 528,096 to 529,649 _RS23160 RR42_RS23165: RR42_RS23165 - LysR family transcriptional regulator, at 529,750 to 530,640 _RS23165 Position (kb) 528 529 530Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 527.270 kb on + strand, within RR42_RS23155at 527.288 kb on + strand, within RR42_RS23155at 527.289 kb on - strand, within RR42_RS23155at 527.439 kb on + strand, within RR42_RS23155at 527.440 kb on - strand, within RR42_RS23155at 527.462 kb on + strand, within RR42_RS23155at 527.462 kb on + strand, within RR42_RS23155at 527.592 kb on - strand, within RR42_RS23155at 527.592 kb on - strand, within RR42_RS23155at 527.729 kb on + strand, within RR42_RS23155at 527.756 kb on + strand, within RR42_RS23155at 527.756 kb on + strand, within RR42_RS23155at 527.756 kb on + strand, within RR42_RS23155at 527.757 kb on - strand, within RR42_RS23155at 527.766 kb on + strand, within RR42_RS23155at 527.766 kb on + strand, within RR42_RS23155at 527.766 kb on + strand, within RR42_RS23155at 527.766 kb on + strand, within RR42_RS23155at 527.767 kb on - strand, within RR42_RS23155at 527.912 kb on + strand, within RR42_RS23155at 527.912 kb on + strand, within RR42_RS23155at 527.913 kb on - strand, within RR42_RS23155at 527.913 kb on - strand, within RR42_RS23155at 528.026 kb on + strandat 528.027 kb on - strandat 528.098 kb on - strandat 528.114 kb on + strandat 528.365 kb on - strand, within RR42_RS23160at 528.365 kb on - strand, within RR42_RS23160at 528.442 kb on + strand, within RR42_RS23160at 528.443 kb on - strand, within RR42_RS23160at 528.443 kb on - strand, within RR42_RS23160at 528.443 kb on - strand, within RR42_RS23160at 528.448 kb on + strand, within RR42_RS23160at 528.449 kb on - strand, within RR42_RS23160at 528.449 kb on - strand, within RR42_RS23160at 528.449 kb on - strand, within RR42_RS23160at 528.742 kb on + strand, within RR42_RS23160at 528.818 kb on - strand, within RR42_RS23160at 528.878 kb on + strand, within RR42_RS23160at 528.878 kb on + strand, within RR42_RS23160at 528.878 kb on + strand, within RR42_RS23160at 528.878 kb on + strand, within RR42_RS23160at 528.989 kb on - strand, within RR42_RS23160at 528.989 kb on - strand, within RR42_RS23160at 528.994 kb on + strand, within RR42_RS23160at 528.995 kb on - strand, within RR42_RS23160at 528.995 kb on - strand, within RR42_RS23160at 529.117 kb on + strand, within RR42_RS23160at 529.240 kb on + strand, within RR42_RS23160at 529.319 kb on - strand, within RR42_RS23160at 529.327 kb on + strand, within RR42_RS23160at 529.328 kb on - strand, within RR42_RS23160at 529.435 kb on + strand, within RR42_RS23160at 529.436 kb on - strand, within RR42_RS23160at 529.436 kb on - strand, within RR42_RS23160at 529.564 kb on + strandat 529.564 kb on + strandat 529.565 kb on - strandat 529.585 kb on + strandat 529.586 kb on - strandat 529.586 kb on - strandat 529.613 kb on - strandat 529.685 kb on + strandat 529.686 kb on - strandat 529.704 kb on - strandat 529.772 kb on - strandat 529.772 kb on - strandat 530.038 kb on + strand, within RR42_RS23165at 530.343 kb on + strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.468 kb on + strand, within RR42_RS23165at 530.468 kb on + strand, within RR42_RS23165at 530.468 kb on + strand, within RR42_RS23165at 530.469 kb on - strand, within RR42_RS23165at 530.475 kb on - strand, within RR42_RS23165at 530.584 kb on + strandat 530.584 kb on + strandat 530.584 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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527,270 + RR42_RS23155 0.31 +0.5
527,288 + RR42_RS23155 0.33 +2.2
527,289 - RR42_RS23155 0.33 -1.0
527,439 + RR42_RS23155 0.45 +2.2
527,440 - RR42_RS23155 0.45 -1.8
527,462 + RR42_RS23155 0.47 -0.5
527,462 + RR42_RS23155 0.47 -0.7
527,592 - RR42_RS23155 0.58 -1.1
527,592 - RR42_RS23155 0.58 -0.7
527,729 + RR42_RS23155 0.70 +0.5
527,756 + RR42_RS23155 0.72 -0.4
527,756 + RR42_RS23155 0.72 -0.9
527,756 + RR42_RS23155 0.72 +1.7
527,757 - RR42_RS23155 0.72 +0.4
527,766 + RR42_RS23155 0.73 -0.4
527,766 + RR42_RS23155 0.73 +0.4
527,766 + RR42_RS23155 0.73 +2.8
527,766 + RR42_RS23155 0.73 -1.2
527,767 - RR42_RS23155 0.73 -0.5
527,912 + RR42_RS23155 0.85 +0.2
527,912 + RR42_RS23155 0.85 +0.4
527,913 - RR42_RS23155 0.85 -0.2
527,913 - RR42_RS23155 0.85 +0.2
528,026 + -0.3
528,027 - -1.7
528,098 - -0.1
528,114 + -0.4
528,365 - RR42_RS23160 0.17 -0.4
528,365 - RR42_RS23160 0.17 -0.7
528,442 + RR42_RS23160 0.22 +0.4
528,443 - RR42_RS23160 0.22 +0.7
528,443 - RR42_RS23160 0.22 +1.8
528,443 - RR42_RS23160 0.22 -0.7
528,448 + RR42_RS23160 0.23 +0.1
528,449 - RR42_RS23160 0.23 -0.5
528,449 - RR42_RS23160 0.23 -1.2
528,449 - RR42_RS23160 0.23 -0.7
528,742 + RR42_RS23160 0.42 +0.4
528,818 - RR42_RS23160 0.46 +0.1
528,878 + RR42_RS23160 0.50 -0.6
528,878 + RR42_RS23160 0.50 +0.0
528,878 + RR42_RS23160 0.50 +0.5
528,878 + RR42_RS23160 0.50 +0.2
528,989 - RR42_RS23160 0.57 -0.4
528,989 - RR42_RS23160 0.57 +0.4
528,994 + RR42_RS23160 0.58 -0.5
528,995 - RR42_RS23160 0.58 +0.2
528,995 - RR42_RS23160 0.58 -0.4
529,117 + RR42_RS23160 0.66 +0.5
529,240 + RR42_RS23160 0.74 +0.7
529,319 - RR42_RS23160 0.79 +0.8
529,327 + RR42_RS23160 0.79 +0.0
529,328 - RR42_RS23160 0.79 -1.2
529,435 + RR42_RS23160 0.86 -0.8
529,436 - RR42_RS23160 0.86 +0.4
529,436 - RR42_RS23160 0.86 +0.0
529,564 + +2.2
529,564 + +2.8
529,565 - +0.9
529,585 + +0.3
529,586 - -0.8
529,586 - -0.2
529,613 - +0.4
529,685 + -0.2
529,686 - -0.4
529,704 - +0.0
529,772 - -2.9
529,772 - +0.9
530,038 + RR42_RS23165 0.32 -0.8
530,343 + RR42_RS23165 0.67 +1.6
530,344 - RR42_RS23165 0.67 +0.1
530,344 - RR42_RS23165 0.67 +0.9
530,344 - RR42_RS23165 0.67 +0.5
530,344 - RR42_RS23165 0.67 +0.4
530,344 - RR42_RS23165 0.67 +0.4
530,468 + RR42_RS23165 0.81 +0.2
530,468 + RR42_RS23165 0.81 +0.7
530,468 + RR42_RS23165 0.81 -0.2
530,469 - RR42_RS23165 0.81 +1.3
530,475 - RR42_RS23165 0.81 +0.3
530,584 + -0.6
530,584 + -0.0
530,584 + +0.6

Or see this region's nucleotide sequence