Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03905

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS03900 and RR42_RS03905 are separated by 124 nucleotidesRR42_RS03905 and RR42_RS03910 are separated by 169 nucleotidesRR42_RS03910 and RR42_RS03915 overlap by 4 nucleotides RR42_RS03900: RR42_RS03900 - membrane protein, at 859,697 to 860,821 _RS03900 RR42_RS03905: RR42_RS03905 - hypothetical protein, at 860,946 to 861,863 _RS03905 RR42_RS03910: RR42_RS03910 - (2Fe-2S)-binding protein, at 862,033 to 862,506 _RS03910 RR42_RS03915: RR42_RS03915 - hypothetical protein, at 862,503 to 864,788 _RS03915 Position (kb) 860 861 862Strain fitness (log2 ratio) -2 -1 0 1 2at 860.022 kb on + strand, within RR42_RS03900at 860.089 kb on + strand, within RR42_RS03900at 860.090 kb on - strand, within RR42_RS03900at 860.184 kb on + strand, within RR42_RS03900at 860.184 kb on + strand, within RR42_RS03900at 860.299 kb on - strand, within RR42_RS03900at 860.464 kb on - strand, within RR42_RS03900at 860.464 kb on - strand, within RR42_RS03900at 860.583 kb on + strand, within RR42_RS03900at 860.677 kb on + strand, within RR42_RS03900at 860.678 kb on - strand, within RR42_RS03900at 860.678 kb on - strand, within RR42_RS03900at 860.678 kb on - strand, within RR42_RS03900at 860.680 kb on - strand, within RR42_RS03900at 860.685 kb on + strand, within RR42_RS03900at 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.868 kb on + strandat 860.869 kb on - strandat 860.870 kb on + strandat 860.871 kb on - strandat 860.947 kb on + strandat 860.947 kb on + strandat 860.948 kb on - strandat 860.954 kb on + strandat 860.954 kb on + strandat 860.954 kb on + strandat 860.955 kb on - strandat 860.955 kb on - strandat 860.988 kb on + strandat 860.988 kb on + strandat 861.064 kb on + strand, within RR42_RS03905at 861.281 kb on + strand, within RR42_RS03905at 861.281 kb on + strand, within RR42_RS03905at 861.282 kb on - strand, within RR42_RS03905at 861.282 kb on - strand, within RR42_RS03905at 861.282 kb on - strand, within RR42_RS03905at 861.539 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.557 kb on - strand, within RR42_RS03905at 861.590 kb on - strand, within RR42_RS03905at 861.784 kb on - strandat 861.785 kb on + strandat 861.785 kb on + strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.889 kb on + strandat 862.441 kb on + strand, within RR42_RS03910at 862.442 kb on - strand, within RR42_RS03910at 862.442 kb on - strand, within RR42_RS03910at 862.523 kb on + strandat 862.524 kb on - strandat 862.737 kb on + strand, within RR42_RS03915at 862.738 kb on - strand, within RR42_RS03915at 862.814 kb on - strand, within RR42_RS03915at 862.814 kb on - strand, within RR42_RS03915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
860,022 + RR42_RS03900 0.29 +0.5
860,089 + RR42_RS03900 0.35 +0.0
860,090 - RR42_RS03900 0.35 -0.0
860,184 + RR42_RS03900 0.43 -0.7
860,184 + RR42_RS03900 0.43 -0.4
860,299 - RR42_RS03900 0.54 +0.2
860,464 - RR42_RS03900 0.68 -0.8
860,464 - RR42_RS03900 0.68 +0.0
860,583 + RR42_RS03900 0.79 +0.4
860,677 + RR42_RS03900 0.87 -0.2
860,678 - RR42_RS03900 0.87 -0.2
860,678 - RR42_RS03900 0.87 +0.3
860,678 - RR42_RS03900 0.87 -0.2
860,680 - RR42_RS03900 0.87 +0.2
860,685 + RR42_RS03900 0.88 +0.1
860,866 + -1.1
860,866 + -0.1
860,866 + -0.3
860,866 + +0.4
860,866 + -0.2
860,866 + +0.3
860,866 + -0.4
860,866 + +0.2
860,866 + +0.6
860,866 + -0.1
860,867 - +1.0
860,867 - -0.7
860,867 - -0.6
860,867 - -0.9
860,867 - -1.0
860,867 - +0.8
860,867 - +0.7
860,867 - +0.0
860,868 + -0.7
860,869 - +0.6
860,870 + -0.5
860,871 - -0.2
860,947 + +1.9
860,947 + +0.5
860,948 - +0.4
860,954 + +1.2
860,954 + +0.2
860,954 + +0.2
860,955 - +0.4
860,955 - +0.4
860,988 + -0.3
860,988 + +1.8
861,064 + RR42_RS03905 0.13 -0.0
861,281 + RR42_RS03905 0.36 +1.2
861,281 + RR42_RS03905 0.36 +2.2
861,282 - RR42_RS03905 0.37 +1.2
861,282 - RR42_RS03905 0.37 +0.9
861,282 - RR42_RS03905 0.37 +1.2
861,539 + RR42_RS03905 0.65 +0.4
861,556 + RR42_RS03905 0.66 +1.3
861,556 + RR42_RS03905 0.66 -0.7
861,556 + RR42_RS03905 0.66 -0.2
861,556 + RR42_RS03905 0.66 +0.9
861,556 + RR42_RS03905 0.66 +0.5
861,557 - RR42_RS03905 0.67 -0.5
861,590 - RR42_RS03905 0.70 +1.2
861,784 - -0.4
861,785 + +0.5
861,785 + +0.6
861,786 - -0.1
861,786 - -0.4
861,786 - -1.4
861,786 - +0.2
861,786 - -0.3
861,786 - +0.6
861,786 - -0.4
861,786 - +0.2
861,889 + +0.7
862,441 + RR42_RS03910 0.86 +0.7
862,442 - RR42_RS03910 0.86 -0.8
862,442 - RR42_RS03910 0.86 -1.0
862,523 + -0.4
862,524 - -2.7
862,737 + RR42_RS03915 0.10 +0.3
862,738 - RR42_RS03915 0.10 -0.1
862,814 - RR42_RS03915 0.14 -0.4
862,814 - RR42_RS03915 0.14 +0.5

Or see this region's nucleotide sequence