Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25015 and RR42_RS25020 are separated by 22 nucleotides RR42_RS25020 and RR42_RS25025 are separated by 21 nucleotides RR42_RS25025 and RR42_RS25030 are separated by 53 nucleotides RR42_RS25030 and RR42_RS25035 overlap by 4 nucleotides
RR42_RS25015: RR42_RS25015 - gluconolactonase, at 950,464 to 951,348
_RS25015
RR42_RS25020: RR42_RS25020 - amino acid ABC transporter ATPase, at 951,371 to 952,129
_RS25020
RR42_RS25025: RR42_RS25025 - sugar ABC transporter ATPase, at 952,151 to 952,921
_RS25025
RR42_RS25030: RR42_RS25030 - ABC transporter permease, at 952,975 to 953,820
_RS25030
RR42_RS25035: RR42_RS25035 - ABC transporter permease, at 953,817 to 954,710
_RS25035
Position (kb) 952
953 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 951.263 kb on + strand at 951.269 kb on + strand at 951.269 kb on + strand at 951.269 kb on + strand at 951.270 kb on - strand at 951.270 kb on - strand at 951.396 kb on + strand at 951.397 kb on - strand at 952.164 kb on + strand at 952.165 kb on - strand at 952.242 kb on + strand, within RR42_RS25025 at 952.243 kb on - strand, within RR42_RS25025 at 952.243 kb on - strand, within RR42_RS25025 at 952.243 kb on - strand, within RR42_RS25025 at 952.248 kb on + strand, within RR42_RS25025 at 952.249 kb on - strand, within RR42_RS25025 at 952.430 kb on - strand, within RR42_RS25025 at 953.036 kb on + strand at 953.307 kb on - strand, within RR42_RS25030 at 953.682 kb on - strand, within RR42_RS25030 at 953.769 kb on - strand at 953.769 kb on - strand at 953.810 kb on + strand at 953.811 kb on - strand at 953.811 kb on - strand at 953.820 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 951,263 + +1.5 951,269 + -1.5 951,269 + -0.0 951,269 + +0.3 951,270 - +0.0 951,270 - -2.0 951,396 + +2.6 951,397 - +0.6 952,164 + -0.2 952,165 - +1.5 952,242 + RR42_RS25025 0.12 -1.0 952,243 - RR42_RS25025 0.12 -0.9 952,243 - RR42_RS25025 0.12 -1.3 952,243 - RR42_RS25025 0.12 -2.2 952,248 + RR42_RS25025 0.13 +0.7 952,249 - RR42_RS25025 0.13 -0.0 952,430 - RR42_RS25025 0.36 -0.8 953,036 + -2.8 953,307 - RR42_RS25030 0.39 -1.3 953,682 - RR42_RS25030 0.84 +0.4 953,769 - +0.1 953,769 - -1.2 953,810 + +3.0 953,811 - -0.0 953,811 - -0.3 953,820 + -0.0
Or see this region's nucleotide sequence