Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24575

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24570 and RR42_RS24575 are separated by 714 nucleotidesRR42_RS24575 and RR42_RS24580 are separated by 59 nucleotides RR42_RS24570: RR42_RS24570 - alpha/beta hydrolase, at 845,289 to 846,266 _RS24570 RR42_RS24575: RR42_RS24575 - endoribonuclease L-PSP, at 846,981 to 847,394 _RS24575 RR42_RS24580: RR42_RS24580 - hypothetical protein, at 847,454 to 848,818 _RS24580 Position (kb) 846 847 848Strain fitness (log2 ratio) -2 -1 0 1 2 3at 846.028 kb on + strand, within RR42_RS24570at 846.062 kb on + strand, within RR42_RS24570at 846.108 kb on + strand, within RR42_RS24570at 846.220 kb on + strandat 846.235 kb on + strandat 846.236 kb on - strandat 846.327 kb on - strandat 846.432 kb on + strandat 846.650 kb on - strandat 846.915 kb on - strandat 846.961 kb on + strandat 846.995 kb on + strandat 847.035 kb on + strand, within RR42_RS24575at 847.036 kb on - strand, within RR42_RS24575at 847.282 kb on - strand, within RR42_RS24575at 847.437 kb on - strandat 847.500 kb on + strandat 847.500 kb on + strandat 847.501 kb on - strandat 847.580 kb on - strandat 847.638 kb on - strand, within RR42_RS24580at 847.709 kb on + strand, within RR42_RS24580at 847.709 kb on + strand, within RR42_RS24580at 847.710 kb on - strandat 847.710 kb on - strand, within RR42_RS24580at 847.778 kb on + strand, within RR42_RS24580at 847.828 kb on + strand, within RR42_RS24580at 847.943 kb on + strand, within RR42_RS24580at 847.943 kb on + strand, within RR42_RS24580at 847.943 kb on + strand, within RR42_RS24580at 847.943 kb on + strand, within RR42_RS24580at 847.944 kb on - strand, within RR42_RS24580at 847.945 kb on + strand, within RR42_RS24580at 847.945 kb on + strand, within RR42_RS24580at 847.945 kb on + strand, within RR42_RS24580at 847.945 kb on + strand, within RR42_RS24580at 847.946 kb on - strand, within RR42_RS24580at 847.946 kb on - strand, within RR42_RS24580at 847.950 kb on - strand, within RR42_RS24580at 847.950 kb on - strand, within RR42_RS24580at 847.950 kb on - strand, within RR42_RS24580at 847.950 kb on - strand, within RR42_RS24580at 847.950 kb on - strand, within RR42_RS24580at 848.177 kb on + strand, within RR42_RS24580at 848.178 kb on - strand, within RR42_RS24580at 848.204 kb on + strand, within RR42_RS24580at 848.204 kb on + strand, within RR42_RS24580at 848.205 kb on - strand, within RR42_RS24580at 848.207 kb on + strand, within RR42_RS24580at 848.286 kb on - strand, within RR42_RS24580at 848.372 kb on + strand, within RR42_RS24580at 848.372 kb on + strand, within RR42_RS24580at 848.390 kb on + strand, within RR42_RS24580at 848.391 kb on - strand, within RR42_RS24580at 848.391 kb on - strand, within RR42_RS24580at 848.391 kb on - strand, within RR42_RS24580

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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846,028 + RR42_RS24570 0.76 +0.7
846,062 + RR42_RS24570 0.79 -0.5
846,108 + RR42_RS24570 0.84 -0.7
846,220 + -0.5
846,235 + +0.1
846,236 - +2.9
846,327 - -0.1
846,432 + -1.5
846,650 - +3.2
846,915 - -0.9
846,961 + -1.7
846,995 + -0.0
847,035 + RR42_RS24575 0.13 -1.4
847,036 - RR42_RS24575 0.13 -1.0
847,282 - RR42_RS24575 0.73 -0.9
847,437 - -1.3
847,500 + +0.3
847,500 + -1.1
847,501 - -0.0
847,580 - +0.4
847,638 - RR42_RS24580 0.13 +0.3
847,709 + RR42_RS24580 0.19 -1.3
847,709 + RR42_RS24580 0.19 -0.0
847,710 - +0.3
847,710 - RR42_RS24580 0.19 -0.0
847,778 + RR42_RS24580 0.24 +0.8
847,828 + RR42_RS24580 0.27 +0.2
847,943 + RR42_RS24580 0.36 -2.4
847,943 + RR42_RS24580 0.36 +0.5
847,943 + RR42_RS24580 0.36 -1.0
847,943 + RR42_RS24580 0.36 +0.5
847,944 - RR42_RS24580 0.36 -0.5
847,945 + RR42_RS24580 0.36 -1.0
847,945 + RR42_RS24580 0.36 -0.0
847,945 + RR42_RS24580 0.36 +0.9
847,945 + RR42_RS24580 0.36 -1.4
847,946 - RR42_RS24580 0.36 -0.3
847,946 - RR42_RS24580 0.36 +0.9
847,950 - RR42_RS24580 0.36 -0.5
847,950 - RR42_RS24580 0.36 -0.4
847,950 - RR42_RS24580 0.36 -2.7
847,950 - RR42_RS24580 0.36 +0.3
847,950 - RR42_RS24580 0.36 +0.3
848,177 + RR42_RS24580 0.53 +3.1
848,178 - RR42_RS24580 0.53 +0.9
848,204 + RR42_RS24580 0.55 -1.7
848,204 + RR42_RS24580 0.55 -0.4
848,205 - RR42_RS24580 0.55 +0.5
848,207 + RR42_RS24580 0.55 -0.2
848,286 - RR42_RS24580 0.61 +1.4
848,372 + RR42_RS24580 0.67 -0.5
848,372 + RR42_RS24580 0.67 +0.6
848,390 + RR42_RS24580 0.69 +0.9
848,391 - RR42_RS24580 0.69 +0.2
848,391 - RR42_RS24580 0.69 +0.7
848,391 - RR42_RS24580 0.69 -1.3

Or see this region's nucleotide sequence