Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23895 and RR42_RS23900 are separated by 10 nucleotides RR42_RS23900 and RR42_RS23905 are separated by 94 nucleotides RR42_RS23905 and RR42_RS23910 overlap by 4 nucleotides RR42_RS23910 and RR42_RS23915 are separated by 50 nucleotides RR42_RS23915 and RR42_RS23920 overlap by 1 nucleotides
RR42_RS23895: RR42_RS23895 - hypothetical protein, at 687,903 to 688,616
_RS23895
RR42_RS23900: RR42_RS23900 - hypothetical protein, at 688,627 to 689,109
_RS23900
RR42_RS23905: RR42_RS23905 - hypothetical protein, at 689,204 to 691,897
_RS23905
RR42_RS23910: RR42_RS23910 - hypothetical protein, at 691,894 to 692,343
_RS23910
RR42_RS23915: RR42_RS23915 - hypothetical protein, at 692,394 to 692,870
_RS23915
RR42_RS23920: RR42_RS23920 - hypothetical protein, at 692,870 to 693,496
_RS23920
Position (kb) 689
690
691
692 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 688.243 kb on - strand, within RR42_RS23895 at 688.243 kb on - strand, within RR42_RS23895 at 688.243 kb on - strand, within RR42_RS23895 at 688.320 kb on + strand, within RR42_RS23895 at 688.320 kb on + strand, within RR42_RS23895 at 688.626 kb on + strand at 688.627 kb on - strand at 688.765 kb on + strand, within RR42_RS23900 at 688.766 kb on - strand, within RR42_RS23900 at 688.886 kb on - strand, within RR42_RS23900 at 688.886 kb on - strand, within RR42_RS23900 at 688.978 kb on + strand, within RR42_RS23900 at 688.979 kb on - strand, within RR42_RS23900 at 688.984 kb on + strand, within RR42_RS23900 at 688.985 kb on - strand, within RR42_RS23900 at 688.985 kb on - strand, within RR42_RS23900 at 688.985 kb on - strand, within RR42_RS23900 at 688.985 kb on - strand, within RR42_RS23900 at 688.985 kb on - strand, within RR42_RS23900 at 688.999 kb on - strand, within RR42_RS23900 at 689.240 kb on + strand at 689.322 kb on - strand at 689.789 kb on - strand, within RR42_RS23905 at 689.789 kb on - strand, within RR42_RS23905 at 689.789 kb on - strand, within RR42_RS23905 at 689.805 kb on - strand, within RR42_RS23905 at 689.810 kb on + strand, within RR42_RS23905 at 690.038 kb on + strand, within RR42_RS23905 at 690.039 kb on - strand, within RR42_RS23905 at 690.089 kb on - strand, within RR42_RS23905 at 690.089 kb on - strand, within RR42_RS23905 at 690.089 kb on - strand, within RR42_RS23905 at 690.325 kb on - strand, within RR42_RS23905 at 690.458 kb on + strand, within RR42_RS23905 at 690.644 kb on - strand, within RR42_RS23905 at 690.668 kb on + strand, within RR42_RS23905 at 690.668 kb on + strand, within RR42_RS23905 at 690.668 kb on + strand, within RR42_RS23905 at 690.668 kb on + strand, within RR42_RS23905 at 690.668 kb on + strand, within RR42_RS23905 at 690.668 kb on + strand, within RR42_RS23905 at 690.669 kb on - strand, within RR42_RS23905 at 690.669 kb on - strand, within RR42_RS23905 at 690.669 kb on - strand, within RR42_RS23905 at 690.818 kb on + strand, within RR42_RS23905 at 690.819 kb on - strand, within RR42_RS23905 at 691.185 kb on - strand, within RR42_RS23905 at 691.257 kb on + strand, within RR42_RS23905 at 691.325 kb on + strand, within RR42_RS23905 at 691.326 kb on - strand, within RR42_RS23905 at 691.326 kb on - strand, within RR42_RS23905 at 691.440 kb on - strand, within RR42_RS23905 at 691.484 kb on + strand, within RR42_RS23905 at 691.484 kb on + strand, within RR42_RS23905 at 691.485 kb on - strand, within RR42_RS23905 at 691.601 kb on + strand, within RR42_RS23905 at 691.602 kb on - strand, within RR42_RS23905 at 691.602 kb on - strand, within RR42_RS23905 at 691.602 kb on - strand, within RR42_RS23905 at 691.844 kb on + strand at 691.845 kb on - strand at 691.877 kb on + strand at 691.878 kb on - strand at 691.878 kb on - strand at 692.189 kb on + strand, within RR42_RS23910 at 692.189 kb on + strand, within RR42_RS23910 at 692.218 kb on + strand, within RR42_RS23910 at 692.453 kb on - strand, within RR42_RS23915 at 692.453 kb on - strand, within RR42_RS23915 at 692.668 kb on - strand, within RR42_RS23915
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 688,243 - RR42_RS23895 0.48 -0.6 688,243 - RR42_RS23895 0.48 -1.2 688,243 - RR42_RS23895 0.48 -0.3 688,320 + RR42_RS23895 0.58 +0.4 688,320 + RR42_RS23895 0.58 -1.9 688,626 + +1.6 688,627 - +0.0 688,765 + RR42_RS23900 0.29 -0.8 688,766 - RR42_RS23900 0.29 -0.1 688,886 - RR42_RS23900 0.54 +0.1 688,886 - RR42_RS23900 0.54 -1.2 688,978 + RR42_RS23900 0.73 -0.2 688,979 - RR42_RS23900 0.73 +0.8 688,984 + RR42_RS23900 0.74 +0.3 688,985 - RR42_RS23900 0.74 -0.3 688,985 - RR42_RS23900 0.74 -0.5 688,985 - RR42_RS23900 0.74 -0.6 688,985 - RR42_RS23900 0.74 -0.1 688,985 - RR42_RS23900 0.74 -1.4 688,999 - RR42_RS23900 0.77 -1.1 689,240 + +2.1 689,322 - +0.9 689,789 - RR42_RS23905 0.22 +0.7 689,789 - RR42_RS23905 0.22 +2.1 689,789 - RR42_RS23905 0.22 -1.0 689,805 - RR42_RS23905 0.22 +0.5 689,810 + RR42_RS23905 0.22 -2.1 690,038 + RR42_RS23905 0.31 -0.4 690,039 - RR42_RS23905 0.31 +0.1 690,089 - RR42_RS23905 0.33 +0.4 690,089 - RR42_RS23905 0.33 -0.5 690,089 - RR42_RS23905 0.33 -0.5 690,325 - RR42_RS23905 0.42 -2.0 690,458 + RR42_RS23905 0.47 +0.8 690,644 - RR42_RS23905 0.53 -0.8 690,668 + RR42_RS23905 0.54 -0.2 690,668 + RR42_RS23905 0.54 +0.7 690,668 + RR42_RS23905 0.54 -0.0 690,668 + RR42_RS23905 0.54 -0.6 690,668 + RR42_RS23905 0.54 +0.8 690,668 + RR42_RS23905 0.54 +1.1 690,669 - RR42_RS23905 0.54 +2.9 690,669 - RR42_RS23905 0.54 -0.4 690,669 - RR42_RS23905 0.54 -1.7 690,818 + RR42_RS23905 0.60 -0.6 690,819 - RR42_RS23905 0.60 +0.1 691,185 - RR42_RS23905 0.74 +1.3 691,257 + RR42_RS23905 0.76 -1.4 691,325 + RR42_RS23905 0.79 +1.0 691,326 - RR42_RS23905 0.79 +1.9 691,326 - RR42_RS23905 0.79 +0.3 691,440 - RR42_RS23905 0.83 +1.6 691,484 + RR42_RS23905 0.85 +0.5 691,484 + RR42_RS23905 0.85 +0.5 691,485 - RR42_RS23905 0.85 -0.6 691,601 + RR42_RS23905 0.89 +0.8 691,602 - RR42_RS23905 0.89 +0.3 691,602 - RR42_RS23905 0.89 +0.3 691,602 - RR42_RS23905 0.89 -2.6 691,844 + -1.5 691,845 - -0.8 691,877 + +0.3 691,878 - +0.5 691,878 - +0.1 692,189 + RR42_RS23910 0.66 +0.1 692,189 + RR42_RS23910 0.66 +1.3 692,218 + RR42_RS23910 0.72 -1.1 692,453 - RR42_RS23915 0.12 -0.5 692,453 - RR42_RS23915 0.12 +0.1 692,668 - RR42_RS23915 0.57 +1.9
Or see this region's nucleotide sequence