Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23440 and RR42_RS23445 are separated by 281 nucleotides RR42_RS23445 and RR42_RS23450 are separated by 32 nucleotides RR42_RS23450 and RR42_RS23455 are separated by 3 nucleotides
RR42_RS23440: RR42_RS23440 - hypothetical protein, at 585,177 to 586,136
_RS23440
RR42_RS23445: RR42_RS23445 - LacI family transcriptional regulator, at 586,418 to 587,410
_RS23445
RR42_RS23450: RR42_RS23450 - enoyl-CoA hydratase, at 587,443 to 588,237
_RS23450
RR42_RS23455: RR42_RS23455 - 6-carboxyhexanoate--CoA ligase, at 588,241 to 590,331
_RS23455
Position (kb) 586
587
588 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 585.477 kb on + strand, within RR42_RS23440 at 585.477 kb on + strand, within RR42_RS23440 at 585.478 kb on - strand, within RR42_RS23440 at 585.479 kb on + strand, within RR42_RS23440 at 585.479 kb on + strand, within RR42_RS23440 at 585.479 kb on + strand, within RR42_RS23440 at 585.480 kb on - strand, within RR42_RS23440 at 585.480 kb on - strand, within RR42_RS23440 at 585.492 kb on + strand, within RR42_RS23440 at 585.493 kb on - strand, within RR42_RS23440 at 585.660 kb on - strand, within RR42_RS23440 at 585.714 kb on + strand, within RR42_RS23440 at 585.714 kb on + strand, within RR42_RS23440 at 585.714 kb on + strand, within RR42_RS23440 at 585.714 kb on + strand, within RR42_RS23440 at 585.715 kb on - strand, within RR42_RS23440 at 585.715 kb on - strand, within RR42_RS23440 at 585.855 kb on + strand, within RR42_RS23440 at 585.856 kb on - strand, within RR42_RS23440 at 585.890 kb on + strand, within RR42_RS23440 at 585.890 kb on + strand, within RR42_RS23440 at 585.891 kb on - strand, within RR42_RS23440 at 586.236 kb on + strand at 586.333 kb on + strand at 586.341 kb on - strand at 586.341 kb on - strand at 586.345 kb on - strand at 586.375 kb on - strand at 586.417 kb on + strand at 586.417 kb on + strand at 586.418 kb on - strand at 586.418 kb on - strand at 586.424 kb on - strand at 586.424 kb on - strand at 586.694 kb on + strand, within RR42_RS23445 at 586.895 kb on + strand, within RR42_RS23445 at 586.896 kb on - strand, within RR42_RS23445 at 586.976 kb on - strand, within RR42_RS23445 at 587.230 kb on + strand, within RR42_RS23445 at 587.345 kb on + strand at 587.346 kb on - strand at 587.350 kb on - strand at 587.409 kb on - strand at 587.453 kb on - strand at 587.474 kb on - strand at 587.646 kb on - strand, within RR42_RS23450 at 587.646 kb on - strand, within RR42_RS23450 at 587.725 kb on + strand, within RR42_RS23450 at 587.726 kb on - strand, within RR42_RS23450 at 587.745 kb on + strand, within RR42_RS23450 at 587.746 kb on - strand, within RR42_RS23450 at 587.746 kb on - strand, within RR42_RS23450 at 587.746 kb on - strand, within RR42_RS23450 at 587.746 kb on - strand, within RR42_RS23450 at 587.863 kb on + strand, within RR42_RS23450 at 587.863 kb on + strand, within RR42_RS23450 at 587.902 kb on + strand, within RR42_RS23450 at 587.902 kb on + strand, within RR42_RS23450 at 587.903 kb on - strand, within RR42_RS23450 at 587.952 kb on + strand, within RR42_RS23450 at 588.172 kb on + strand at 588.172 kb on + strand at 588.249 kb on + strand at 588.249 kb on + strand at 588.364 kb on - strand at 588.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 585,477 + RR42_RS23440 0.31 -0.1 585,477 + RR42_RS23440 0.31 -1.5 585,478 - RR42_RS23440 0.31 -0.1 585,479 + RR42_RS23440 0.31 +1.2 585,479 + RR42_RS23440 0.31 +0.8 585,479 + RR42_RS23440 0.31 +0.2 585,480 - RR42_RS23440 0.32 -1.1 585,480 - RR42_RS23440 0.32 -0.4 585,492 + RR42_RS23440 0.33 -0.6 585,493 - RR42_RS23440 0.33 +0.7 585,660 - RR42_RS23440 0.50 -2.6 585,714 + RR42_RS23440 0.56 -0.1 585,714 + RR42_RS23440 0.56 +0.3 585,714 + RR42_RS23440 0.56 -0.5 585,714 + RR42_RS23440 0.56 -2.1 585,715 - RR42_RS23440 0.56 -0.6 585,715 - RR42_RS23440 0.56 +0.0 585,855 + RR42_RS23440 0.71 -1.3 585,856 - RR42_RS23440 0.71 -0.3 585,890 + RR42_RS23440 0.74 -0.9 585,890 + RR42_RS23440 0.74 +2.1 585,891 - RR42_RS23440 0.74 +0.1 586,236 + -1.2 586,333 + +0.1 586,341 - +0.3 586,341 - -2.9 586,345 - +0.1 586,375 - -1.6 586,417 + -2.7 586,417 + +0.1 586,418 - +0.3 586,418 - +0.3 586,424 - -0.5 586,424 - -0.7 586,694 + RR42_RS23445 0.28 -0.4 586,895 + RR42_RS23445 0.48 +1.5 586,896 - RR42_RS23445 0.48 -1.6 586,976 - RR42_RS23445 0.56 -1.4 587,230 + RR42_RS23445 0.82 -1.2 587,345 + -2.3 587,346 - +0.6 587,350 - -1.3 587,409 - +1.7 587,453 - +0.1 587,474 - +1.1 587,646 - RR42_RS23450 0.26 -1.9 587,646 - RR42_RS23450 0.26 -0.3 587,725 + RR42_RS23450 0.35 -0.9 587,726 - RR42_RS23450 0.36 +0.6 587,745 + RR42_RS23450 0.38 +0.5 587,746 - RR42_RS23450 0.38 +1.1 587,746 - RR42_RS23450 0.38 -0.5 587,746 - RR42_RS23450 0.38 -2.0 587,746 - RR42_RS23450 0.38 -0.9 587,863 + RR42_RS23450 0.53 +0.9 587,863 + RR42_RS23450 0.53 -1.6 587,902 + RR42_RS23450 0.58 +1.1 587,902 + RR42_RS23450 0.58 +0.3 587,903 - RR42_RS23450 0.58 -0.5 587,952 + RR42_RS23450 0.64 -0.0 588,172 + +0.0 588,172 + -0.8 588,249 + +0.6 588,249 + +0.5 588,364 - -0.8 588,364 - -0.2
Or see this region's nucleotide sequence