Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23315 and RR42_RS23320 are separated by 84 nucleotides RR42_RS23320 and RR42_RS23325 are separated by 288 nucleotides
RR42_RS23315: RR42_RS23315 - serine/threonine protein phosphatase, at 560,860 to 562,416
_RS23315
RR42_RS23320: RR42_RS23320 - hypothetical protein, at 562,501 to 564,165
_RS23320
RR42_RS23325: RR42_RS23325 - class D beta-lactamase, at 564,454 to 565,239
_RS23325
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 561.843 kb on - strand, within RR42_RS23315 at 562.155 kb on - strand, within RR42_RS23315 at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.420 kb on + strand at 562.421 kb on - strand at 562.421 kb on - strand at 562.421 kb on - strand at 562.421 kb on - strand at 562.421 kb on - strand at 562.422 kb on + strand at 562.422 kb on + strand at 562.422 kb on + strand at 562.422 kb on + strand at 562.423 kb on - strand at 562.423 kb on - strand at 562.423 kb on - strand at 562.433 kb on + strand at 562.433 kb on + strand at 562.456 kb on + strand at 562.459 kb on - strand at 562.459 kb on - strand at 562.489 kb on + strand at 562.489 kb on + strand at 562.489 kb on + strand at 562.490 kb on - strand at 562.490 kb on - strand at 562.490 kb on - strand at 562.754 kb on + strand, within RR42_RS23320 at 562.754 kb on + strand, within RR42_RS23320 at 563.168 kb on + strand, within RR42_RS23320 at 563.168 kb on + strand, within RR42_RS23320 at 563.169 kb on - strand, within RR42_RS23320 at 563.169 kb on - strand, within RR42_RS23320 at 563.169 kb on - strand, within RR42_RS23320 at 563.319 kb on - strand, within RR42_RS23320 at 563.696 kb on + strand, within RR42_RS23320 at 563.697 kb on - strand, within RR42_RS23320 at 563.717 kb on + strand, within RR42_RS23320 at 563.718 kb on - strand, within RR42_RS23320 at 563.995 kb on - strand, within RR42_RS23320 at 564.257 kb on + strand at 564.369 kb on + strand at 564.369 kb on + strand at 564.667 kb on + strand, within RR42_RS23325 at 564.831 kb on + strand, within RR42_RS23325 at 564.968 kb on - strand, within RR42_RS23325 at 564.968 kb on - strand, within RR42_RS23325
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 561,843 - RR42_RS23315 0.63 +1.0 562,155 - RR42_RS23315 0.83 +1.1 562,420 + -0.0 562,420 + -1.6 562,420 + -0.1 562,420 + +0.4 562,420 + +0.1 562,420 + +2.1 562,420 + -2.6 562,420 + +0.4 562,420 + +1.5 562,421 - -1.1 562,421 - -0.2 562,421 - -0.5 562,421 - +3.1 562,421 - +0.0 562,422 + +0.2 562,422 + -0.7 562,422 + +0.6 562,422 + +1.1 562,423 - +0.6 562,423 - +0.0 562,423 - -1.6 562,433 + -0.3 562,433 + +1.1 562,456 + +0.9 562,459 - +0.2 562,459 - +0.3 562,489 + +1.1 562,489 + +0.8 562,489 + +2.1 562,490 - +0.4 562,490 - +1.1 562,490 - +1.9 562,754 + RR42_RS23320 0.15 -0.8 562,754 + RR42_RS23320 0.15 +3.7 563,168 + RR42_RS23320 0.40 -0.3 563,168 + RR42_RS23320 0.40 -0.6 563,169 - RR42_RS23320 0.40 -1.8 563,169 - RR42_RS23320 0.40 -0.2 563,169 - RR42_RS23320 0.40 +0.6 563,319 - RR42_RS23320 0.49 -1.0 563,696 + RR42_RS23320 0.72 +1.5 563,697 - RR42_RS23320 0.72 -3.8 563,717 + RR42_RS23320 0.73 -0.9 563,718 - RR42_RS23320 0.73 +1.1 563,995 - RR42_RS23320 0.90 -0.0 564,257 + -1.8 564,369 + +0.2 564,369 + +1.9 564,667 + RR42_RS23325 0.27 -0.2 564,831 + RR42_RS23325 0.48 -0.9 564,968 - RR42_RS23325 0.65 -0.6 564,968 - RR42_RS23325 0.65 -1.2
Or see this region's nucleotide sequence