Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23290 and RR42_RS23295 are separated by 32 nucleotides RR42_RS23295 and RR42_RS23300 are separated by 29 nucleotides RR42_RS23300 and RR42_RS23305 are separated by 93 nucleotides RR42_RS23305 and RR42_RS23310 overlap by 4 nucleotides
RR42_RS23290: RR42_RS23290 - hypothetical protein, at 555,575 to 557,095
_RS23290
RR42_RS23295: RR42_RS23295 - hypothetical protein, at 557,128 to 557,865
_RS23295
RR42_RS23300: RR42_RS23300 - hypothetical protein, at 557,895 to 558,860
_RS23300
RR42_RS23305: RR42_RS23305 - hypothetical protein, at 558,954 to 559,529
_RS23305
RR42_RS23310: RR42_RS23310 - cytochrome B6, at 559,526 to 560,863
_RS23310
Position (kb) 557
558
559 Strain fitness (log2 ratio) -2
-1
0
1 at 557.093 kb on + strand at 557.094 kb on - strand at 557.100 kb on - strand at 557.127 kb on + strand at 557.127 kb on + strand at 557.128 kb on - strand at 557.128 kb on - strand at 557.128 kb on - strand at 557.514 kb on + strand, within RR42_RS23295 at 557.762 kb on - strand, within RR42_RS23295 at 557.762 kb on - strand, within RR42_RS23295 at 557.990 kb on + strand at 557.990 kb on + strand at 557.991 kb on - strand at 557.991 kb on - strand at 558.052 kb on + strand, within RR42_RS23300 at 558.053 kb on - strand, within RR42_RS23300 at 558.053 kb on - strand, within RR42_RS23300 at 558.392 kb on - strand, within RR42_RS23300 at 558.392 kb on - strand, within RR42_RS23300 at 558.392 kb on - strand, within RR42_RS23300 at 558.460 kb on - strand, within RR42_RS23300 at 558.460 kb on - strand, within RR42_RS23300 at 558.572 kb on - strand, within RR42_RS23300 at 558.623 kb on + strand, within RR42_RS23300 at 558.788 kb on + strand at 558.789 kb on - strand at 558.793 kb on - strand at 558.920 kb on - strand at 558.920 kb on - strand at 559.317 kb on + strand, within RR42_RS23305 at 559.365 kb on + strand, within RR42_RS23305 at 559.566 kb on + strand at 559.567 kb on - strand at 559.567 kb on - strand at 559.761 kb on + strand, within RR42_RS23310 at 559.762 kb on - strand, within RR42_RS23310 at 559.762 kb on - strand, within RR42_RS23310 at 559.762 kb on - strand, within RR42_RS23310
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 557,093 + -0.5 557,094 - -0.5 557,100 - -0.1 557,127 + -0.8 557,127 + +0.1 557,128 - +1.3 557,128 - +1.1 557,128 - +0.5 557,514 + RR42_RS23295 0.52 -0.5 557,762 - RR42_RS23295 0.86 -1.2 557,762 - RR42_RS23295 0.86 -0.1 557,990 + +1.4 557,990 + +0.8 557,991 - -0.5 557,991 - +0.1 558,052 + RR42_RS23300 0.16 +0.9 558,053 - RR42_RS23300 0.16 +0.2 558,053 - RR42_RS23300 0.16 -0.9 558,392 - RR42_RS23300 0.51 +0.1 558,392 - RR42_RS23300 0.51 -2.4 558,392 - RR42_RS23300 0.51 -1.1 558,460 - RR42_RS23300 0.58 -1.4 558,460 - RR42_RS23300 0.58 -2.3 558,572 - RR42_RS23300 0.70 +0.5 558,623 + RR42_RS23300 0.75 -0.9 558,788 + +1.1 558,789 - -0.2 558,793 - -0.7 558,920 - +0.2 558,920 - -0.7 559,317 + RR42_RS23305 0.63 -0.2 559,365 + RR42_RS23305 0.71 +0.3 559,566 + -0.9 559,567 - -0.5 559,567 - -1.5 559,761 + RR42_RS23310 0.18 -2.2 559,762 - RR42_RS23310 0.18 +0.2 559,762 - RR42_RS23310 0.18 +0.9 559,762 - RR42_RS23310 0.18 +0.4
Or see this region's nucleotide sequence