Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23170

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23165 and RR42_RS23170 are separated by 9 nucleotidesRR42_RS23170 and RR42_RS23175 are separated by 192 nucleotides RR42_RS23165: RR42_RS23165 - LysR family transcriptional regulator, at 529,750 to 530,640 _RS23165 RR42_RS23170: RR42_RS23170 - LysR family transcriptional regulator, at 530,650 to 531,585 _RS23170 RR42_RS23175: RR42_RS23175 - mandelate racemase, at 531,778 to 532,947 _RS23175 Position (kb) 530 531 532Strain fitness (log2 ratio) -2 -1 0 1 2at 529.685 kb on + strandat 529.686 kb on - strandat 529.704 kb on - strandat 529.772 kb on - strandat 529.772 kb on - strandat 530.038 kb on + strand, within RR42_RS23165at 530.343 kb on + strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.468 kb on + strand, within RR42_RS23165at 530.468 kb on + strand, within RR42_RS23165at 530.468 kb on + strand, within RR42_RS23165at 530.469 kb on - strand, within RR42_RS23165at 530.475 kb on - strand, within RR42_RS23165at 530.584 kb on + strandat 530.584 kb on + strandat 530.584 kb on + strandat 530.651 kb on + strandat 530.769 kb on - strand, within RR42_RS23170at 530.837 kb on + strand, within RR42_RS23170at 530.837 kb on + strand, within RR42_RS23170at 530.837 kb on + strand, within RR42_RS23170at 530.935 kb on + strand, within RR42_RS23170at 530.935 kb on + strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.977 kb on + strand, within RR42_RS23170at 530.977 kb on + strand, within RR42_RS23170at 530.978 kb on - strand, within RR42_RS23170at 530.978 kb on - strand, within RR42_RS23170at 530.978 kb on - strand, within RR42_RS23170at 531.068 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.533 kb on + strandat 531.621 kb on + strandat 531.622 kb on - strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.655 kb on - strandat 531.732 kb on - strandat 531.838 kb on + strandat 531.838 kb on + strandat 531.838 kb on + strandat 531.838 kb on + strandat 531.838 kb on + strandat 531.839 kb on - strandat 531.841 kb on - strandat 531.841 kb on - strandat 532.225 kb on + strand, within RR42_RS23175at 532.240 kb on + strand, within RR42_RS23175at 532.240 kb on + strand, within RR42_RS23175at 532.244 kb on - strand, within RR42_RS23175at 532.244 kb on - strand, within RR42_RS23175at 532.244 kb on - strand, within RR42_RS23175at 532.247 kb on - strand, within RR42_RS23175at 532.291 kb on + strand, within RR42_RS23175at 532.291 kb on + strand, within RR42_RS23175at 532.292 kb on - strand, within RR42_RS23175at 532.292 kb on - strand, within RR42_RS23175at 532.308 kb on + strand, within RR42_RS23175at 532.308 kb on + strand, within RR42_RS23175at 532.309 kb on - strand, within RR42_RS23175at 532.309 kb on - strand, within RR42_RS23175at 532.309 kb on - strand, within RR42_RS23175at 532.309 kb on - strand, within RR42_RS23175at 532.486 kb on + strand, within RR42_RS23175at 532.540 kb on + strand, within RR42_RS23175at 532.543 kb on + strand, within RR42_RS23175at 532.543 kb on + strand, within RR42_RS23175at 532.543 kb on + strand, within RR42_RS23175at 532.544 kb on - strand, within RR42_RS23175

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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529,685 + -0.6
529,686 - -1.8
529,704 - -0.6
529,772 - +0.3
529,772 - -0.1
530,038 + RR42_RS23165 0.32 -0.8
530,343 + RR42_RS23165 0.67 +0.5
530,344 - RR42_RS23165 0.67 -1.0
530,344 - RR42_RS23165 0.67 -1.2
530,344 - RR42_RS23165 0.67 -0.2
530,344 - RR42_RS23165 0.67 +0.2
530,344 - RR42_RS23165 0.67 -0.6
530,468 + RR42_RS23165 0.81 -0.3
530,468 + RR42_RS23165 0.81 -1.4
530,468 + RR42_RS23165 0.81 -1.4
530,469 - RR42_RS23165 0.81 +1.2
530,475 - RR42_RS23165 0.81 +1.0
530,584 + -1.3
530,584 + -0.0
530,584 + -0.1
530,651 + -0.1
530,769 - RR42_RS23170 0.13 -0.3
530,837 + RR42_RS23170 0.20 -0.3
530,837 + RR42_RS23170 0.20 +1.4
530,837 + RR42_RS23170 0.20 -0.8
530,935 + RR42_RS23170 0.30 -0.3
530,935 + RR42_RS23170 0.30 +0.3
530,936 - RR42_RS23170 0.31 -1.0
530,936 - RR42_RS23170 0.31 +1.9
530,936 - RR42_RS23170 0.31 +0.2
530,936 - RR42_RS23170 0.31 -1.1
530,977 + RR42_RS23170 0.35 +1.7
530,977 + RR42_RS23170 0.35 +0.2
530,978 - RR42_RS23170 0.35 +0.2
530,978 - RR42_RS23170 0.35 +0.7
530,978 - RR42_RS23170 0.35 -0.4
531,068 + RR42_RS23170 0.45 -0.5
531,386 + RR42_RS23170 0.79 +1.7
531,386 + RR42_RS23170 0.79 +1.4
531,386 + RR42_RS23170 0.79 +1.1
531,386 + RR42_RS23170 0.79 +0.4
531,386 + RR42_RS23170 0.79 +0.6
531,386 + RR42_RS23170 0.79 +0.0
531,387 - RR42_RS23170 0.79 +0.6
531,387 - RR42_RS23170 0.79 -1.5
531,387 - RR42_RS23170 0.79 -0.7
531,387 - RR42_RS23170 0.79 -0.7
531,533 + +1.1
531,621 + -1.0
531,622 - -1.0
531,630 + -0.8
531,630 + -0.1
531,630 + +0.8
531,630 + -1.4
531,630 + +1.9
531,630 + +1.4
531,630 + -0.9
531,630 + +1.6
531,630 + +0.1
531,630 + -0.7
531,630 + +0.1
531,630 + -0.1
531,630 + -1.8
531,631 - -0.4
531,631 - -1.5
531,631 - +0.3
531,631 - +0.1
531,631 - -0.2
531,631 - +0.9
531,631 - +2.6
531,631 - +0.0
531,631 - +1.5
531,631 - +1.0
531,631 - -0.4
531,631 - +0.8
531,631 - -0.4
531,655 - +0.4
531,732 - -0.2
531,838 + +1.8
531,838 + +0.0
531,838 + -1.8
531,838 + -0.2
531,838 + -0.1
531,839 - +0.1
531,841 - -0.5
531,841 - +0.2
532,225 + RR42_RS23175 0.38 +0.1
532,240 + RR42_RS23175 0.39 -1.1
532,240 + RR42_RS23175 0.39 -0.7
532,244 - RR42_RS23175 0.40 -1.0
532,244 - RR42_RS23175 0.40 -1.1
532,244 - RR42_RS23175 0.40 +0.2
532,247 - RR42_RS23175 0.40 -1.2
532,291 + RR42_RS23175 0.44 -0.8
532,291 + RR42_RS23175 0.44 +1.8
532,292 - RR42_RS23175 0.44 -0.3
532,292 - RR42_RS23175 0.44 -0.4
532,308 + RR42_RS23175 0.45 -0.9
532,308 + RR42_RS23175 0.45 -0.8
532,309 - RR42_RS23175 0.45 -1.7
532,309 - RR42_RS23175 0.45 +0.3
532,309 - RR42_RS23175 0.45 -1.8
532,309 - RR42_RS23175 0.45 +2.1
532,486 + RR42_RS23175 0.61 +0.2
532,540 + RR42_RS23175 0.65 -1.9
532,543 + RR42_RS23175 0.65 -0.5
532,543 + RR42_RS23175 0.65 -2.0
532,543 + RR42_RS23175 0.65 +2.3
532,544 - RR42_RS23175 0.65 -0.7

Or see this region's nucleotide sequence