Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21930 and RR42_RS21935 are separated by 253 nucleotides RR42_RS21935 and RR42_RS21940 are separated by 164 nucleotides
RR42_RS21930: RR42_RS21930 - hypothetical protein, at 245,174 to 246,007
_RS21930
RR42_RS21935: RR42_RS21935 - 4-hydroxybenzoate transporter, at 246,261 to 247,601
_RS21935
RR42_RS21940: RR42_RS21940 - 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) <small>(from data)</small>, at 247,766 to 248,935
_RS21940
Position (kb) 246
247
248 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16 at 245.346 kb on + strand, within RR42_RS21930 at 245.346 kb on + strand, within RR42_RS21930 at 245.346 kb on + strand, within RR42_RS21930 at 245.347 kb on - strand, within RR42_RS21930 at 245.598 kb on + strand, within RR42_RS21930 at 245.849 kb on - strand, within RR42_RS21930 at 245.898 kb on + strand, within RR42_RS21930 at 245.898 kb on + strand, within RR42_RS21930 at 245.899 kb on - strand, within RR42_RS21930 at 245.899 kb on - strand, within RR42_RS21930 at 245.899 kb on - strand, within RR42_RS21930 at 245.910 kb on + strand, within RR42_RS21930 at 245.985 kb on + strand at 245.986 kb on - strand at 245.986 kb on - strand at 245.997 kb on + strand at 245.997 kb on + strand at 245.998 kb on - strand at 246.040 kb on + strand at 246.054 kb on - strand at 246.063 kb on + strand at 246.064 kb on - strand at 246.064 kb on - strand at 246.072 kb on + strand at 246.072 kb on + strand at 246.073 kb on - strand at 246.073 kb on - strand at 246.073 kb on - strand at 246.081 kb on - strand at 246.130 kb on + strand at 246.131 kb on - strand at 246.172 kb on + strand at 246.173 kb on - strand at 246.375 kb on + strand at 246.375 kb on + strand at 246.376 kb on - strand at 246.496 kb on + strand, within RR42_RS21935 at 246.496 kb on + strand, within RR42_RS21935 at 246.497 kb on - strand, within RR42_RS21935 at 246.515 kb on + strand, within RR42_RS21935 at 246.516 kb on - strand, within RR42_RS21935 at 246.516 kb on - strand, within RR42_RS21935 at 246.610 kb on + strand, within RR42_RS21935 at 246.611 kb on - strand, within RR42_RS21935 at 246.799 kb on + strand, within RR42_RS21935 at 246.799 kb on + strand, within RR42_RS21935 at 246.823 kb on + strand, within RR42_RS21935 at 246.823 kb on + strand, within RR42_RS21935 at 246.823 kb on + strand, within RR42_RS21935 at 246.823 kb on + strand, within RR42_RS21935 at 246.824 kb on - strand, within RR42_RS21935 at 246.824 kb on - strand, within RR42_RS21935 at 246.939 kb on + strand, within RR42_RS21935 at 246.939 kb on + strand, within RR42_RS21935 at 246.940 kb on - strand, within RR42_RS21935 at 247.096 kb on + strand, within RR42_RS21935 at 247.148 kb on + strand, within RR42_RS21935 at 247.149 kb on - strand, within RR42_RS21935 at 247.201 kb on + strand, within RR42_RS21935 at 247.484 kb on + strand at 247.684 kb on + strand at 247.771 kb on - strand at 247.786 kb on - strand at 247.786 kb on - strand at 247.786 kb on - strand at 247.956 kb on + strand, within RR42_RS21940 at 247.957 kb on - strand, within RR42_RS21940 at 248.016 kb on + strand, within RR42_RS21940 at 248.016 kb on + strand, within RR42_RS21940 at 248.017 kb on - strand, within RR42_RS21940 at 248.017 kb on - strand, within RR42_RS21940 at 248.192 kb on - strand, within RR42_RS21940 at 248.194 kb on + strand, within RR42_RS21940 at 248.274 kb on + strand, within RR42_RS21940 at 248.277 kb on + strand, within RR42_RS21940 at 248.277 kb on + strand, within RR42_RS21940 at 248.278 kb on - strand, within RR42_RS21940 at 248.337 kb on + strand, within RR42_RS21940 at 248.337 kb on + strand, within RR42_RS21940 at 248.338 kb on - strand, within RR42_RS21940 at 248.338 kb on - strand, within RR42_RS21940 at 248.397 kb on + strand, within RR42_RS21940 at 248.497 kb on - strand, within RR42_RS21940 at 248.574 kb on + strand, within RR42_RS21940 at 248.575 kb on - strand, within RR42_RS21940
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 245,346 + RR42_RS21930 0.21 +0.4 245,346 + RR42_RS21930 0.21 +0.4 245,346 + RR42_RS21930 0.21 -1.1 245,347 - RR42_RS21930 0.21 -0.7 245,598 + RR42_RS21930 0.51 -0.7 245,849 - RR42_RS21930 0.81 -0.9 245,898 + RR42_RS21930 0.87 +0.0 245,898 + RR42_RS21930 0.87 -0.2 245,899 - RR42_RS21930 0.87 -0.4 245,899 - RR42_RS21930 0.87 -1.4 245,899 - RR42_RS21930 0.87 +0.5 245,910 + RR42_RS21930 0.88 +0.9 245,985 + +0.5 245,986 - -0.5 245,986 - -0.5 245,997 + +2.1 245,997 + +2.3 245,998 - -1.7 246,040 + -1.4 246,054 - +0.3 246,063 + -0.2 246,064 - +0.1 246,064 - +0.5 246,072 + -0.8 246,072 + -2.7 246,073 - +0.2 246,073 - +1.4 246,073 - +0.9 246,081 - +0.8 246,130 + +0.7 246,131 - +1.5 246,172 + +0.5 246,173 - -0.2 246,375 + +0.2 246,375 + -1.6 246,376 - -1.2 246,496 + RR42_RS21935 0.18 +0.0 246,496 + RR42_RS21935 0.18 +0.5 246,497 - RR42_RS21935 0.18 -0.6 246,515 + RR42_RS21935 0.19 +1.0 246,516 - RR42_RS21935 0.19 +2.1 246,516 - RR42_RS21935 0.19 -0.2 246,610 + RR42_RS21935 0.26 -1.1 246,611 - RR42_RS21935 0.26 +0.4 246,799 + RR42_RS21935 0.40 -1.3 246,799 + RR42_RS21935 0.40 +0.1 246,823 + RR42_RS21935 0.42 -0.9 246,823 + RR42_RS21935 0.42 -1.5 246,823 + RR42_RS21935 0.42 -2.2 246,823 + RR42_RS21935 0.42 +2.1 246,824 - RR42_RS21935 0.42 +0.5 246,824 - RR42_RS21935 0.42 +0.3 246,939 + RR42_RS21935 0.51 -1.2 246,939 + RR42_RS21935 0.51 -2.2 246,940 - RR42_RS21935 0.51 +0.9 247,096 + RR42_RS21935 0.62 -1.3 247,148 + RR42_RS21935 0.66 -1.0 247,149 - RR42_RS21935 0.66 -1.4 247,201 + RR42_RS21935 0.70 -0.5 247,484 + -1.4 247,684 + -0.3 247,771 - +4.8 247,786 - +11.2 247,786 - +9.5 247,786 - +10.9 247,956 + RR42_RS21940 0.16 +1.9 247,957 - RR42_RS21940 0.16 +14.1 248,016 + RR42_RS21940 0.21 -1.8 248,016 + RR42_RS21940 0.21 -1.1 248,017 - RR42_RS21940 0.21 +14.3 248,017 - RR42_RS21940 0.21 +16.1 248,192 - RR42_RS21940 0.36 +5.2 248,194 + RR42_RS21940 0.37 -1.9 248,274 + RR42_RS21940 0.43 -0.5 248,277 + RR42_RS21940 0.44 +1.1 248,277 + RR42_RS21940 0.44 +0.1 248,278 - RR42_RS21940 0.44 +9.5 248,337 + RR42_RS21940 0.49 -1.7 248,337 + RR42_RS21940 0.49 -0.9 248,338 - RR42_RS21940 0.49 +6.2 248,338 - RR42_RS21940 0.49 +7.6 248,397 + RR42_RS21940 0.54 +1.1 248,497 - RR42_RS21940 0.62 +5.1 248,574 + RR42_RS21940 0.69 -1.7 248,575 - RR42_RS21940 0.69 +3.7
Or see this region's nucleotide sequence