Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21720 and RR42_RS21725 are separated by 11 nucleotides RR42_RS21725 and RR42_RS21730 are separated by 67 nucleotides
RR42_RS21720: RR42_RS21720 - acetoin catabolism protein X, at 201,745 to 202,869
_RS21720
RR42_RS21725: RR42_RS21725 - ABC transporter substrate-binding protein, at 202,881 to 203,885
_RS21725
RR42_RS21730: RR42_RS21730 - pyruvate dehydrogenase subunit beta, at 203,953 to 204,969
_RS21730
Position (kb) 202
203
204 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 202.414 kb on + strand, within RR42_RS21720 at 202.414 kb on + strand, within RR42_RS21720 at 202.415 kb on - strand, within RR42_RS21720 at 203.037 kb on + strand, within RR42_RS21725 at 203.037 kb on + strand, within RR42_RS21725 at 203.173 kb on - strand, within RR42_RS21725 at 203.173 kb on - strand, within RR42_RS21725 at 203.219 kb on + strand, within RR42_RS21725 at 203.219 kb on + strand, within RR42_RS21725 at 203.219 kb on + strand, within RR42_RS21725 at 203.487 kb on + strand, within RR42_RS21725 at 203.487 kb on + strand, within RR42_RS21725 at 203.487 kb on + strand, within RR42_RS21725 at 203.488 kb on - strand, within RR42_RS21725 at 203.637 kb on + strand, within RR42_RS21725 at 203.871 kb on + strand at 203.871 kb on + strand at 203.872 kb on - strand at 203.872 kb on - strand at 203.872 kb on - strand at 203.883 kb on + strand at 203.883 kb on + strand at 203.884 kb on - strand at 203.920 kb on + strand at 203.920 kb on + strand at 203.921 kb on - strand at 203.921 kb on - strand at 203.921 kb on - strand at 203.921 kb on - strand at 203.921 kb on - strand at 203.967 kb on - strand at 204.118 kb on + strand, within RR42_RS21730 at 204.119 kb on - strand, within RR42_RS21730 at 204.169 kb on + strand, within RR42_RS21730 at 204.169 kb on + strand, within RR42_RS21730 at 204.170 kb on - strand, within RR42_RS21730 at 204.289 kb on + strand, within RR42_RS21730 at 204.290 kb on - strand, within RR42_RS21730 at 204.400 kb on - strand, within RR42_RS21730 at 204.436 kb on + strand, within RR42_RS21730 at 204.436 kb on + strand, within RR42_RS21730 at 204.436 kb on + strand, within RR42_RS21730 at 204.544 kb on + strand, within RR42_RS21730
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 202,414 + RR42_RS21720 0.59 -1.4 202,414 + RR42_RS21720 0.59 -0.1 202,415 - RR42_RS21720 0.60 -1.2 203,037 + RR42_RS21725 0.16 -0.2 203,037 + RR42_RS21725 0.16 -0.2 203,173 - RR42_RS21725 0.29 -1.4 203,173 - RR42_RS21725 0.29 -1.5 203,219 + RR42_RS21725 0.34 -2.4 203,219 + RR42_RS21725 0.34 +1.7 203,219 + RR42_RS21725 0.34 -1.6 203,487 + RR42_RS21725 0.60 +1.8 203,487 + RR42_RS21725 0.60 +0.0 203,487 + RR42_RS21725 0.60 -0.2 203,488 - RR42_RS21725 0.60 +1.2 203,637 + RR42_RS21725 0.75 -0.1 203,871 + -1.6 203,871 + -2.6 203,872 - -1.8 203,872 - +0.4 203,872 - +0.0 203,883 + +0.9 203,883 + +0.4 203,884 - +1.0 203,920 + +0.7 203,920 + -0.1 203,921 - -0.1 203,921 - +0.8 203,921 - +0.0 203,921 - -0.3 203,921 - -1.1 203,967 - +2.1 204,118 + RR42_RS21730 0.16 -0.4 204,119 - RR42_RS21730 0.16 +0.6 204,169 + RR42_RS21730 0.21 -4.1 204,169 + RR42_RS21730 0.21 +2.1 204,170 - RR42_RS21730 0.21 -1.1 204,289 + RR42_RS21730 0.33 -1.0 204,290 - RR42_RS21730 0.33 +0.7 204,400 - RR42_RS21730 0.44 -0.4 204,436 + RR42_RS21730 0.47 -1.0 204,436 + RR42_RS21730 0.47 -0.1 204,436 + RR42_RS21730 0.47 +1.5 204,544 + RR42_RS21730 0.58 +0.0
Or see this region's nucleotide sequence