Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11745

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11740 and RR42_RS11745 overlap by 26 nucleotidesRR42_RS11745 and RR42_RS11750 are separated by 141 nucleotides RR42_RS11740: RR42_RS11740 - GMP synthase, at 2,511,035 to 2,512,654 _RS11740 RR42_RS11745: RR42_RS11745 - membrane protein, at 2,512,629 to 2,513,231 _RS11745 RR42_RS11750: RR42_RS11750 - inosine-5-monophosphate dehydrogenase, at 2,513,373 to 2,514,836 _RS11750 Position (kb) 2512 2513 2514Strain fitness (log2 ratio) -2 -1 0 1 2at 2512.953 kb on - strand, within RR42_RS11745at 2512.953 kb on - strand, within RR42_RS11745at 2512.953 kb on - strand, within RR42_RS11745at 2512.953 kb on - strand, within RR42_RS11745at 2513.025 kb on - strand, within RR42_RS11745at 2513.025 kb on - strand, within RR42_RS11745at 2513.025 kb on - strand, within RR42_RS11745at 2513.099 kb on - strand, within RR42_RS11745at 2513.136 kb on - strand, within RR42_RS11745at 2513.136 kb on - strand, within RR42_RS11745at 2513.136 kb on - strand, within RR42_RS11745at 2513.224 kb on - strandat 2513.224 kb on - strandat 2513.384 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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2,512,953 - RR42_RS11745 0.54 -1.1
2,512,953 - RR42_RS11745 0.54 -1.2
2,512,953 - RR42_RS11745 0.54 +0.2
2,512,953 - RR42_RS11745 0.54 -2.2
2,513,025 - RR42_RS11745 0.66 +0.6
2,513,025 - RR42_RS11745 0.66 +0.3
2,513,025 - RR42_RS11745 0.66 -0.9
2,513,099 - RR42_RS11745 0.78 -0.6
2,513,136 - RR42_RS11745 0.84 -0.7
2,513,136 - RR42_RS11745 0.84 +1.8
2,513,136 - RR42_RS11745 0.84 -0.6
2,513,224 - -0.4
2,513,224 - +1.4
2,513,384 - +0.1

Or see this region's nucleotide sequence