Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS05655 and RR42_RS05660 are separated by 66 nucleotides RR42_RS05660 and RR42_RS05665 are separated by 44 nucleotides RR42_RS05665 and RR42_RS05670 are separated by 28 nucleotides RR42_RS05670 and RR42_RS05675 overlap by 1 nucleotides
RR42_RS05655: RR42_RS05655 - urease accessory protein UreD, at 1,245,645 to 1,246,517
_RS05655
RR42_RS05660: RR42_RS05660 - urease subunit gamma, at 1,246,584 to 1,246,886
_RS05660
RR42_RS05665: RR42_RS05665 - urease accessory protein UreJ, at 1,246,931 to 1,247,563
_RS05665
RR42_RS05670: RR42_RS05670 - urease subunit beta, at 1,247,592 to 1,247,897
_RS05670
RR42_RS05675: RR42_RS05675 - urease subunit alpha, at 1,247,897 to 1,249,615
_RS05675
Position (kb) 1246
1247
1248 Strain fitness (log2 ratio) -2
-1
0
1 at 1246.283 kb on - strand, within RR42_RS05655 at 1246.516 kb on - strand at 1246.516 kb on - strand at 1247.418 kb on - strand, within RR42_RS05665 at 1247.778 kb on - strand, within RR42_RS05670 at 1247.863 kb on - strand, within RR42_RS05670
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 1,246,283 - RR42_RS05655 0.73 -1.9 1,246,516 - +0.4 1,246,516 - -0.8 1,247,418 - RR42_RS05665 0.77 -1.2 1,247,778 - RR42_RS05670 0.61 -1.6 1,247,863 - RR42_RS05670 0.89 -1.1
Or see this region's nucleotide sequence