Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04910

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04905 and RR42_RS04910 are separated by 5 nucleotidesRR42_RS04910 and RR42_RS04915 are separated by 84 nucleotidesRR42_RS04915 and RR42_RS04920 are separated by 257 nucleotides RR42_RS04905: RR42_RS04905 - hypothetical protein, at 1,087,881 to 1,088,822 _RS04905 RR42_RS04910: RR42_RS04910 - guanylate kinase, at 1,088,828 to 1,089,481 _RS04910 RR42_RS04915: RR42_RS04915 - DNA-directed RNA polymerase subunit omega, at 1,089,566 to 1,089,769 _RS04915 RR42_RS04920: RR42_RS04920 - guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 1,090,027 to 1,092,444 _RS04920 Position (kb) 1088 1089 1090Strain fitness (log2 ratio) -2 -1 0 1at 1087.875 kb on + strandat 1087.875 kb on + strandat 1087.875 kb on + strandat 1088.815 kb on + strandat 1088.820 kb on + strandat 1089.759 kb on + strandat 1089.804 kb on + strandat 1089.804 kb on + strandat 1089.804 kb on + strandat 1089.831 kb on + strandat 1089.831 kb on + strandat 1089.831 kb on + strandat 1089.831 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,087,875 + -2.1
1,087,875 + +0.3
1,087,875 + -2.4
1,088,815 + -0.8
1,088,820 + -2.2
1,089,759 + -0.2
1,089,804 + +0.1
1,089,804 + -0.4
1,089,804 + -0.9
1,089,831 + -0.9
1,089,831 + -0.6
1,089,831 + -0.9
1,089,831 + -0.7

Or see this region's nucleotide sequence