Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04905 and RR42_RS04910 are separated by 5 nucleotides RR42_RS04910 and RR42_RS04915 are separated by 84 nucleotides RR42_RS04915 and RR42_RS04920 are separated by 257 nucleotides
RR42_RS04905: RR42_RS04905 - hypothetical protein, at 1,087,881 to 1,088,822
_RS04905
RR42_RS04910: RR42_RS04910 - guanylate kinase, at 1,088,828 to 1,089,481
_RS04910
RR42_RS04915: RR42_RS04915 - DNA-directed RNA polymerase subunit omega, at 1,089,566 to 1,089,769
_RS04915
RR42_RS04920: RR42_RS04920 - guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 1,090,027 to 1,092,444
_RS04920
Position (kb) 1088
1089
1090 Strain fitness (log2 ratio) -2
-1
0
1 at 1087.875 kb on + strand at 1087.875 kb on + strand at 1087.875 kb on + strand at 1088.815 kb on + strand at 1088.820 kb on + strand at 1089.759 kb on + strand at 1089.804 kb on + strand at 1089.804 kb on + strand at 1089.804 kb on + strand at 1089.831 kb on + strand at 1089.831 kb on + strand at 1089.831 kb on + strand at 1089.831 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 1,087,875 + -2.1 1,087,875 + +0.3 1,087,875 + -2.4 1,088,815 + -0.8 1,088,820 + -2.2 1,089,759 + -0.2 1,089,804 + +0.1 1,089,804 + -0.4 1,089,804 + -0.9 1,089,831 + -0.9 1,089,831 + -0.6 1,089,831 + -0.9 1,089,831 + -0.7
Or see this region's nucleotide sequence