Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03855 and RR42_RS03860 are separated by 324 nucleotides RR42_RS03860 and RR42_RS03865 are separated by 93 nucleotides
RR42_RS03855: RR42_RS03855 - MFS transporter, at 851,532 to 852,515
_RS03855
RR42_RS03860: RR42_RS03860 - transcriptional regulator, at 852,840 to 853,919
_RS03860
RR42_RS03865: RR42_RS03865 - hydroxyacid dehydrogenase, at 854,013 to 854,954
_RS03865
Position (kb) 852
853
854 Strain fitness (log2 ratio) -2
-1
0
1
2 at 851.953 kb on + strand, within RR42_RS03855 at 852.117 kb on + strand, within RR42_RS03855 at 852.178 kb on + strand, within RR42_RS03855 at 852.244 kb on + strand, within RR42_RS03855 at 852.244 kb on + strand, within RR42_RS03855 at 852.244 kb on + strand, within RR42_RS03855 at 852.271 kb on + strand, within RR42_RS03855 at 852.284 kb on + strand, within RR42_RS03855 at 852.406 kb on + strand, within RR42_RS03855 at 852.406 kb on + strand, within RR42_RS03855 at 852.407 kb on - strand, within RR42_RS03855 at 852.562 kb on - strand at 852.562 kb on - strand at 852.562 kb on - strand at 852.562 kb on - strand at 852.565 kb on + strand at 852.566 kb on - strand at 852.566 kb on - strand at 852.566 kb on - strand at 852.566 kb on - strand at 852.566 kb on - strand at 852.568 kb on + strand at 852.568 kb on + strand at 852.569 kb on - strand at 852.569 kb on - strand at 852.569 kb on - strand at 852.607 kb on + strand at 852.608 kb on - strand at 852.608 kb on - strand at 853.068 kb on + strand, within RR42_RS03860 at 853.069 kb on - strand, within RR42_RS03860 at 853.069 kb on - strand, within RR42_RS03860 at 853.076 kb on + strand, within RR42_RS03860 at 853.203 kb on + strand, within RR42_RS03860 at 853.769 kb on + strand, within RR42_RS03860 at 853.769 kb on + strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.774 kb on - strand, within RR42_RS03860 at 853.963 kb on + strand at 854.031 kb on - strand at 854.083 kb on - strand at 854.245 kb on - strand, within RR42_RS03865 at 854.245 kb on - strand, within RR42_RS03865 at 854.651 kb on - strand, within RR42_RS03865 at 854.836 kb on + strand, within RR42_RS03865 at 854.836 kb on + strand, within RR42_RS03865 at 854.837 kb on - strand, within RR42_RS03865
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 851,953 + RR42_RS03855 0.43 -1.3 852,117 + RR42_RS03855 0.59 +1.4 852,178 + RR42_RS03855 0.66 +0.9 852,244 + RR42_RS03855 0.72 -0.9 852,244 + RR42_RS03855 0.72 +1.6 852,244 + RR42_RS03855 0.72 +0.3 852,271 + RR42_RS03855 0.75 -1.7 852,284 + RR42_RS03855 0.76 -0.2 852,406 + RR42_RS03855 0.89 -1.0 852,406 + RR42_RS03855 0.89 -0.2 852,407 - RR42_RS03855 0.89 +0.1 852,562 - +0.2 852,562 - -0.0 852,562 - +0.7 852,562 - -0.8 852,565 + -0.7 852,566 - -0.6 852,566 - +1.8 852,566 - +0.4 852,566 - -0.7 852,566 - -0.0 852,568 + +2.0 852,568 + -0.4 852,569 - -0.3 852,569 - -1.1 852,569 - +0.8 852,607 + -0.7 852,608 - -1.0 852,608 - -1.9 853,068 + RR42_RS03860 0.21 +1.9 853,069 - RR42_RS03860 0.21 +0.5 853,069 - RR42_RS03860 0.21 +0.7 853,076 + RR42_RS03860 0.22 -0.6 853,203 + RR42_RS03860 0.34 -0.9 853,769 + RR42_RS03860 0.86 +1.6 853,769 + RR42_RS03860 0.86 +0.4 853,770 - RR42_RS03860 0.86 -0.1 853,770 - RR42_RS03860 0.86 +0.4 853,770 - RR42_RS03860 0.86 -0.6 853,774 - RR42_RS03860 0.86 -0.1 853,963 + +0.0 854,031 - -0.3 854,083 - +0.3 854,245 - RR42_RS03865 0.25 +0.9 854,245 - RR42_RS03865 0.25 -0.5 854,651 - RR42_RS03865 0.68 +0.9 854,836 + RR42_RS03865 0.87 +0.0 854,836 + RR42_RS03865 0.87 +0.1 854,837 - RR42_RS03865 0.87 -0.5
Or see this region's nucleotide sequence