Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03760 and RR42_RS03765 are separated by 2 nucleotides RR42_RS03765 and RR42_RS03770 overlap by 4 nucleotides RR42_RS03770 and RR42_RS03775 are separated by 83 nucleotides
RR42_RS03760: RR42_RS03760 - formate dehydrogenase, at 829,463 to 832,318
_RS03760
RR42_RS03765: RR42_RS03765 - formate dehydrogenase, at 832,321 to 833,160
_RS03765
RR42_RS03770: RR42_RS03770 - formate dehydrogenase, at 833,157 to 833,381
_RS03770
RR42_RS03775: RR42_RS03775 - transglycosylase, at 833,465 to 834,160
_RS03775
Position (kb) 832
833
834 Strain fitness (log2 ratio) -2
-1
0
1 at 831.335 kb on - strand, within RR42_RS03760 at 831.374 kb on + strand, within RR42_RS03760 at 831.374 kb on + strand, within RR42_RS03760 at 831.491 kb on + strand, within RR42_RS03760 at 831.501 kb on + strand, within RR42_RS03760 at 831.501 kb on + strand, within RR42_RS03760 at 831.659 kb on + strand, within RR42_RS03760 at 831.848 kb on + strand, within RR42_RS03760 at 831.920 kb on + strand, within RR42_RS03760 at 831.920 kb on + strand, within RR42_RS03760 at 832.110 kb on - strand at 832.190 kb on + strand at 832.190 kb on + strand at 832.191 kb on - strand at 832.191 kb on - strand at 832.450 kb on + strand, within RR42_RS03765 at 832.450 kb on + strand, within RR42_RS03765 at 832.559 kb on - strand, within RR42_RS03765 at 832.762 kb on + strand, within RR42_RS03765 at 832.975 kb on + strand, within RR42_RS03765 at 833.051 kb on + strand, within RR42_RS03765 at 833.116 kb on + strand at 833.116 kb on + strand at 833.256 kb on - strand, within RR42_RS03770 at 833.466 kb on + strand at 833.503 kb on - strand at 833.548 kb on + strand, within RR42_RS03775 at 833.549 kb on - strand, within RR42_RS03775 at 833.549 kb on - strand, within RR42_RS03775 at 833.550 kb on + strand, within RR42_RS03775 at 833.550 kb on + strand, within RR42_RS03775 at 833.550 kb on + strand, within RR42_RS03775 at 833.551 kb on - strand, within RR42_RS03775 at 833.551 kb on - strand, within RR42_RS03775 at 833.674 kb on - strand, within RR42_RS03775 at 833.719 kb on - strand, within RR42_RS03775 at 833.719 kb on - strand, within RR42_RS03775 at 833.733 kb on + strand, within RR42_RS03775 at 833.733 kb on + strand, within RR42_RS03775 at 833.733 kb on + strand, within RR42_RS03775 at 833.796 kb on + strand, within RR42_RS03775 at 833.796 kb on + strand, within RR42_RS03775 at 833.797 kb on - strand, within RR42_RS03775 at 833.811 kb on + strand, within RR42_RS03775 at 833.812 kb on - strand, within RR42_RS03775 at 833.812 kb on - strand, within RR42_RS03775 at 833.925 kb on + strand, within RR42_RS03775 at 833.925 kb on + strand, within RR42_RS03775 at 833.925 kb on + strand, within RR42_RS03775 at 833.925 kb on + strand, within RR42_RS03775 at 833.947 kb on - strand, within RR42_RS03775 at 833.947 kb on - strand, within RR42_RS03775 at 834.015 kb on + strand, within RR42_RS03775 at 834.015 kb on + strand, within RR42_RS03775
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 831,335 - RR42_RS03760 0.66 -0.9 831,374 + RR42_RS03760 0.67 -0.4 831,374 + RR42_RS03760 0.67 -0.2 831,491 + RR42_RS03760 0.71 -0.2 831,501 + RR42_RS03760 0.71 -2.2 831,501 + RR42_RS03760 0.71 -2.7 831,659 + RR42_RS03760 0.77 +0.5 831,848 + RR42_RS03760 0.84 +0.7 831,920 + RR42_RS03760 0.86 +0.7 831,920 + RR42_RS03760 0.86 +0.1 832,110 - +0.2 832,190 + -0.8 832,190 + -0.3 832,191 - -0.5 832,191 - +1.1 832,450 + RR42_RS03765 0.15 +0.6 832,450 + RR42_RS03765 0.15 -0.5 832,559 - RR42_RS03765 0.28 -1.8 832,762 + RR42_RS03765 0.53 -0.6 832,975 + RR42_RS03765 0.78 -0.2 833,051 + RR42_RS03765 0.87 +0.2 833,116 + -0.5 833,116 + -1.1 833,256 - RR42_RS03770 0.44 -1.0 833,466 + -0.3 833,503 - -0.8 833,548 + RR42_RS03775 0.12 +1.7 833,549 - RR42_RS03775 0.12 +0.6 833,549 - RR42_RS03775 0.12 +0.1 833,550 + RR42_RS03775 0.12 -0.3 833,550 + RR42_RS03775 0.12 -1.1 833,550 + RR42_RS03775 0.12 -0.3 833,551 - RR42_RS03775 0.12 -1.8 833,551 - RR42_RS03775 0.12 -1.0 833,674 - RR42_RS03775 0.30 -0.5 833,719 - RR42_RS03775 0.36 -0.4 833,719 - RR42_RS03775 0.36 -1.9 833,733 + RR42_RS03775 0.39 +0.4 833,733 + RR42_RS03775 0.39 -1.7 833,733 + RR42_RS03775 0.39 +0.3 833,796 + RR42_RS03775 0.48 +1.5 833,796 + RR42_RS03775 0.48 -0.5 833,797 - RR42_RS03775 0.48 -0.3 833,811 + RR42_RS03775 0.50 -0.4 833,812 - RR42_RS03775 0.50 -0.8 833,812 - RR42_RS03775 0.50 -1.9 833,925 + RR42_RS03775 0.66 +0.3 833,925 + RR42_RS03775 0.66 -0.4 833,925 + RR42_RS03775 0.66 -0.1 833,925 + RR42_RS03775 0.66 -1.9 833,947 - RR42_RS03775 0.69 +0.3 833,947 - RR42_RS03775 0.69 -0.9 834,015 + RR42_RS03775 0.79 +0.8 834,015 + RR42_RS03775 0.79 -0.2
Or see this region's nucleotide sequence