Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03715 and RR42_RS03720 are separated by 137 nucleotides RR42_RS03720 and RR42_RS03725 are separated by 117 nucleotides
RR42_RS03715: RR42_RS03715 - inositol monophosphatase, at 819,289 to 820,080
_RS03715
RR42_RS03720: RR42_RS03720 - heat-shock protein, at 820,218 to 821,471
_RS03720
RR42_RS03725: RR42_RS03725 - magnesium transporter CorA, at 821,589 to 822,608
_RS03725
Position (kb) 820
821
822 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 819.312 kb on + strand at 819.319 kb on + strand at 819.373 kb on + strand, within RR42_RS03715 at 819.484 kb on + strand, within RR42_RS03715 at 819.862 kb on + strand, within RR42_RS03715 at 819.863 kb on - strand, within RR42_RS03715 at 819.925 kb on + strand, within RR42_RS03715 at 820.053 kb on - strand at 820.117 kb on + strand at 820.117 kb on + strand at 820.117 kb on + strand at 820.118 kb on - strand at 820.118 kb on - strand at 820.118 kb on - strand at 820.118 kb on - strand at 820.188 kb on + strand at 820.240 kb on + strand at 820.692 kb on + strand, within RR42_RS03720 at 820.692 kb on + strand, within RR42_RS03720 at 820.719 kb on + strand, within RR42_RS03720 at 820.720 kb on - strand, within RR42_RS03720 at 820.972 kb on - strand, within RR42_RS03720 at 821.545 kb on + strand at 821.545 kb on + strand at 821.546 kb on - strand at 821.546 kb on - strand at 821.617 kb on - strand at 821.766 kb on - strand, within RR42_RS03725 at 821.901 kb on + strand, within RR42_RS03725 at 821.902 kb on - strand, within RR42_RS03725 at 821.902 kb on - strand, within RR42_RS03725
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 819,312 + +0.6 819,319 + -0.8 819,373 + RR42_RS03715 0.11 -0.3 819,484 + RR42_RS03715 0.25 -0.1 819,862 + RR42_RS03715 0.72 -1.3 819,863 - RR42_RS03715 0.72 +0.0 819,925 + RR42_RS03715 0.80 -2.7 820,053 - -0.2 820,117 + +0.1 820,117 + +1.0 820,117 + +1.6 820,118 - -1.7 820,118 - +0.8 820,118 - -2.7 820,118 - +2.0 820,188 + -1.4 820,240 + -0.3 820,692 + RR42_RS03720 0.38 +0.2 820,692 + RR42_RS03720 0.38 +0.1 820,719 + RR42_RS03720 0.40 +1.9 820,720 - RR42_RS03720 0.40 -0.9 820,972 - RR42_RS03720 0.60 -3.0 821,545 + -1.3 821,545 + -1.2 821,546 - +0.6 821,546 - +1.4 821,617 - +0.1 821,766 - RR42_RS03725 0.17 -0.7 821,901 + RR42_RS03725 0.31 +0.9 821,902 - RR42_RS03725 0.31 -0.3 821,902 - RR42_RS03725 0.31 -0.6
Or see this region's nucleotide sequence