Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03370 and RR42_RS03375 are separated by 83 nucleotides RR42_RS03375 and RR42_RS03380 are separated by 135 nucleotides
RR42_RS03370: RR42_RS03370 - fructose ABC transporter, substrate-binding component (FrcB) <small>(from data)</small>, at 749,395 to 750,372
_RS03370
RR42_RS03375: RR42_RS03375 - glucose-6-phosphate dehydrogenase, at 750,456 to 751,946
_RS03375
RR42_RS03380: RR42_RS03380 - glucose-6-phosphate isomerase, at 752,082 to 753,722
_RS03380
Position (kb) 750
751
752 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 749.554 kb on + strand, within RR42_RS03370 at 749.671 kb on - strand, within RR42_RS03370 at 750.040 kb on + strand, within RR42_RS03370 at 750.346 kb on + strand at 750.473 kb on - strand at 750.527 kb on + strand at 750.633 kb on + strand, within RR42_RS03375 at 750.634 kb on - strand, within RR42_RS03375 at 750.634 kb on - strand, within RR42_RS03375 at 750.634 kb on - strand, within RR42_RS03375 at 750.724 kb on - strand, within RR42_RS03375 at 750.724 kb on - strand, within RR42_RS03375 at 750.810 kb on + strand, within RR42_RS03375 at 750.810 kb on + strand, within RR42_RS03375 at 750.981 kb on + strand, within RR42_RS03375 at 750.996 kb on + strand, within RR42_RS03375 at 750.997 kb on - strand, within RR42_RS03375 at 751.048 kb on + strand, within RR42_RS03375 at 751.049 kb on - strand, within RR42_RS03375 at 751.049 kb on - strand, within RR42_RS03375 at 751.049 kb on - strand, within RR42_RS03375 at 751.049 kb on - strand, within RR42_RS03375 at 751.141 kb on - strand, within RR42_RS03375 at 751.327 kb on - strand, within RR42_RS03375 at 751.327 kb on - strand, within RR42_RS03375 at 751.366 kb on - strand, within RR42_RS03375 at 751.464 kb on + strand, within RR42_RS03375 at 751.464 kb on + strand, within RR42_RS03375 at 751.528 kb on + strand, within RR42_RS03375 at 751.529 kb on - strand, within RR42_RS03375 at 751.731 kb on + strand, within RR42_RS03375 at 751.867 kb on - strand at 752.030 kb on + strand at 752.375 kb on + strand, within RR42_RS03380 at 752.376 kb on - strand, within RR42_RS03380
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 749,554 + RR42_RS03370 0.16 -1.0 749,671 - RR42_RS03370 0.28 +0.2 750,040 + RR42_RS03370 0.66 +1.1 750,346 + +3.4 750,473 - +3.8 750,527 + -0.4 750,633 + RR42_RS03375 0.12 -0.8 750,634 - RR42_RS03375 0.12 +1.6 750,634 - RR42_RS03375 0.12 +1.3 750,634 - RR42_RS03375 0.12 +0.2 750,724 - RR42_RS03375 0.18 +1.5 750,724 - RR42_RS03375 0.18 +0.7 750,810 + RR42_RS03375 0.24 +1.1 750,810 + RR42_RS03375 0.24 +0.1 750,981 + RR42_RS03375 0.35 +1.1 750,996 + RR42_RS03375 0.36 -1.4 750,997 - RR42_RS03375 0.36 +1.7 751,048 + RR42_RS03375 0.40 -1.9 751,049 - RR42_RS03375 0.40 +1.6 751,049 - RR42_RS03375 0.40 +2.1 751,049 - RR42_RS03375 0.40 +1.6 751,049 - RR42_RS03375 0.40 +1.4 751,141 - RR42_RS03375 0.46 +0.9 751,327 - RR42_RS03375 0.58 +2.3 751,327 - RR42_RS03375 0.58 +0.7 751,366 - RR42_RS03375 0.61 -0.4 751,464 + RR42_RS03375 0.68 -1.5 751,464 + RR42_RS03375 0.68 -0.9 751,528 + RR42_RS03375 0.72 +1.6 751,529 - RR42_RS03375 0.72 +1.5 751,731 + RR42_RS03375 0.86 +2.1 751,867 - +1.4 752,030 + -0.2 752,375 + RR42_RS03380 0.18 -0.3 752,376 - RR42_RS03380 0.18 +1.8
Or see this region's nucleotide sequence