Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03290

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03285 and RR42_RS03290 are separated by 146 nucleotidesRR42_RS03290 and RR42_RS03295 overlap by 8 nucleotides RR42_RS03285: RR42_RS03285 - tricarboxylic transport membrane protein, at 726,723 to 727,679 _RS03285 RR42_RS03290: RR42_RS03290 - transcriptional regulator, at 727,826 to 728,527 _RS03290 RR42_RS03295: RR42_RS03295 - histidine kinase, at 728,520 to 729,947 _RS03295 Position (kb) 727 728 729Strain fitness (log2 ratio) -2 -1 0 1 2at 726.898 kb on + strand, within RR42_RS03285at 726.899 kb on - strand, within RR42_RS03285at 726.899 kb on - strand, within RR42_RS03285at 726.928 kb on + strand, within RR42_RS03285at 726.929 kb on - strand, within RR42_RS03285at 726.929 kb on - strand, within RR42_RS03285at 727.165 kb on + strand, within RR42_RS03285at 727.165 kb on + strand, within RR42_RS03285at 727.166 kb on - strand, within RR42_RS03285at 727.245 kb on + strand, within RR42_RS03285at 727.245 kb on + strand, within RR42_RS03285at 727.245 kb on + strand, within RR42_RS03285at 727.245 kb on + strand, within RR42_RS03285at 727.246 kb on - strand, within RR42_RS03285at 727.246 kb on - strand, within RR42_RS03285at 727.246 kb on - strand, within RR42_RS03285at 727.320 kb on + strand, within RR42_RS03285at 727.331 kb on - strand, within RR42_RS03285at 727.375 kb on + strand, within RR42_RS03285at 727.376 kb on - strand, within RR42_RS03285at 727.376 kb on - strand, within RR42_RS03285at 727.474 kb on + strand, within RR42_RS03285at 727.474 kb on + strand, within RR42_RS03285at 727.474 kb on + strand, within RR42_RS03285at 727.474 kb on + strand, within RR42_RS03285at 727.475 kb on - strand, within RR42_RS03285at 727.505 kb on - strand, within RR42_RS03285at 727.789 kb on - strandat 727.789 kb on - strandat 727.833 kb on + strandat 727.833 kb on + strandat 727.833 kb on + strandat 727.834 kb on + strandat 727.834 kb on - strandat 727.988 kb on + strandat 727.989 kb on - strand, within RR42_RS03290at 728.147 kb on + strand, within RR42_RS03290at 728.147 kb on + strand, within RR42_RS03290at 728.148 kb on - strand, within RR42_RS03290at 728.148 kb on - strand, within RR42_RS03290at 728.148 kb on - strand, within RR42_RS03290at 728.148 kb on - strand, within RR42_RS03290at 728.334 kb on + strand, within RR42_RS03290at 728.335 kb on - strand, within RR42_RS03290at 728.335 kb on - strand, within RR42_RS03290at 728.378 kb on + strand, within RR42_RS03290at 728.379 kb on - strand, within RR42_RS03290at 728.432 kb on + strand, within RR42_RS03290at 728.433 kb on - strand, within RR42_RS03290at 728.502 kb on - strandat 728.502 kb on - strandat 728.502 kb on - strandat 728.655 kb on + strandat 728.656 kb on - strandat 728.687 kb on + strand, within RR42_RS03295at 728.739 kb on + strand, within RR42_RS03295at 728.739 kb on + strand, within RR42_RS03295at 728.739 kb on + strand, within RR42_RS03295at 728.739 kb on + strand, within RR42_RS03295at 728.740 kb on - strand, within RR42_RS03295at 728.740 kb on - strand, within RR42_RS03295at 728.740 kb on - strand, within RR42_RS03295at 728.740 kb on - strand, within RR42_RS03295at 728.741 kb on + strand, within RR42_RS03295at 728.742 kb on - strand, within RR42_RS03295at 728.742 kb on - strand, within RR42_RS03295at 728.742 kb on - strand, within RR42_RS03295at 728.742 kb on - strand, within RR42_RS03295at 728.788 kb on - strand, within RR42_RS03295at 728.874 kb on + strand, within RR42_RS03295at 728.874 kb on + strand, within RR42_RS03295at 728.874 kb on + strand, within RR42_RS03295at 728.908 kb on - strand, within RR42_RS03295at 729.237 kb on + strand, within RR42_RS03295at 729.238 kb on - strand, within RR42_RS03295

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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726,898 + RR42_RS03285 0.18 -1.9
726,899 - RR42_RS03285 0.18 -0.4
726,899 - RR42_RS03285 0.18 -1.1
726,928 + RR42_RS03285 0.21 -0.6
726,929 - RR42_RS03285 0.22 +0.4
726,929 - RR42_RS03285 0.22 -1.0
727,165 + RR42_RS03285 0.46 -0.1
727,165 + RR42_RS03285 0.46 -1.5
727,166 - RR42_RS03285 0.46 +0.1
727,245 + RR42_RS03285 0.55 -0.9
727,245 + RR42_RS03285 0.55 -0.3
727,245 + RR42_RS03285 0.55 -0.5
727,245 + RR42_RS03285 0.55 -0.7
727,246 - RR42_RS03285 0.55 +0.4
727,246 - RR42_RS03285 0.55 -0.7
727,246 - RR42_RS03285 0.55 +0.2
727,320 + RR42_RS03285 0.62 +0.2
727,331 - RR42_RS03285 0.64 +1.1
727,375 + RR42_RS03285 0.68 -0.4
727,376 - RR42_RS03285 0.68 +0.8
727,376 - RR42_RS03285 0.68 +0.2
727,474 + RR42_RS03285 0.78 -1.9
727,474 + RR42_RS03285 0.78 -1.8
727,474 + RR42_RS03285 0.78 -0.5
727,474 + RR42_RS03285 0.78 -1.2
727,475 - RR42_RS03285 0.79 +1.4
727,505 - RR42_RS03285 0.82 -0.3
727,789 - +1.5
727,789 - -0.5
727,833 + +0.1
727,833 + +0.0
727,833 + +1.2
727,834 + +0.2
727,834 - +0.3
727,988 + +2.1
727,989 - RR42_RS03290 0.23 -0.6
728,147 + RR42_RS03290 0.46 -1.4
728,147 + RR42_RS03290 0.46 -0.1
728,148 - RR42_RS03290 0.46 +0.1
728,148 - RR42_RS03290 0.46 -0.2
728,148 - RR42_RS03290 0.46 +0.1
728,148 - RR42_RS03290 0.46 -0.1
728,334 + RR42_RS03290 0.72 -1.0
728,335 - RR42_RS03290 0.73 +0.4
728,335 - RR42_RS03290 0.73 -0.5
728,378 + RR42_RS03290 0.79 +2.2
728,379 - RR42_RS03290 0.79 -1.1
728,432 + RR42_RS03290 0.86 -0.1
728,433 - RR42_RS03290 0.86 -0.5
728,502 - +0.5
728,502 - -0.9
728,502 - -0.3
728,655 + +0.4
728,656 - +1.1
728,687 + RR42_RS03295 0.12 -0.1
728,739 + RR42_RS03295 0.15 -0.9
728,739 + RR42_RS03295 0.15 +0.9
728,739 + RR42_RS03295 0.15 -1.1
728,739 + RR42_RS03295 0.15 -0.3
728,740 - RR42_RS03295 0.15 -1.2
728,740 - RR42_RS03295 0.15 +0.1
728,740 - RR42_RS03295 0.15 -1.6
728,740 - RR42_RS03295 0.15 -0.4
728,741 + RR42_RS03295 0.15 -0.7
728,742 - RR42_RS03295 0.16 +0.6
728,742 - RR42_RS03295 0.16 -0.8
728,742 - RR42_RS03295 0.16 -0.2
728,742 - RR42_RS03295 0.16 +0.4
728,788 - RR42_RS03295 0.19 -1.1
728,874 + RR42_RS03295 0.25 +0.4
728,874 + RR42_RS03295 0.25 -1.1
728,874 + RR42_RS03295 0.25 -1.5
728,908 - RR42_RS03295 0.27 +0.7
729,237 + RR42_RS03295 0.50 -1.0
729,238 - RR42_RS03295 0.50 +0.6

Or see this region's nucleotide sequence