Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02820

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02810 and RR42_RS02815 are separated by 17 nucleotidesRR42_RS02815 and RR42_RS02820 are separated by 29 nucleotidesRR42_RS02820 and RR42_RS02825 are separated by 36 nucleotidesRR42_RS02825 and RR42_RS02830 overlap by 4 nucleotides RR42_RS02810: RR42_RS02810 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 625,577 to 626,329 _RS02810 RR42_RS02815: RR42_RS02815 - D,D-heptose 1,7-bisphosphate phosphatase, at 626,347 to 626,925 _RS02815 RR42_RS02820: RR42_RS02820 - glycyl-tRNA synthetase subunit beta, at 626,955 to 629,087 _RS02820 RR42_RS02825: RR42_RS02825 - hypothetical protein, at 629,124 to 629,780 _RS02825 RR42_RS02830: RR42_RS02830 - glycyl-tRNA synthetase subunit alpha, at 629,777 to 630,727 _RS02830 Position (kb) 626 627 628 629 630Strain fitness (log2 ratio) -2 -1 0 1at 626.061 kb on + strand, within RR42_RS02810at 626.956 kb on + strandat 629.144 kb on + strandat 629.144 kb on + strandat 629.145 kb on - strandat 629.145 kb on - strandat 629.145 kb on - strandat 629.390 kb on - strand, within RR42_RS02825at 629.390 kb on - strand, within RR42_RS02825at 629.390 kb on - strand, within RR42_RS02825at 629.393 kb on - strand, within RR42_RS02825at 629.393 kb on - strand, within RR42_RS02825at 629.666 kb on - strand, within RR42_RS02825

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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626,061 + RR42_RS02810 0.64 +0.0
626,956 + -0.6
629,144 + +1.3
629,144 + -0.4
629,145 - -1.8
629,145 - +0.7
629,145 - -0.8
629,390 - RR42_RS02825 0.40 -0.1
629,390 - RR42_RS02825 0.40 -0.8
629,390 - RR42_RS02825 0.40 +0.2
629,393 - RR42_RS02825 0.41 +0.3
629,393 - RR42_RS02825 0.41 -0.7
629,666 - RR42_RS02825 0.82 -1.5

Or see this region's nucleotide sequence