Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02355 and RR42_RS02360 are separated by 127 nucleotides RR42_RS02360 and RR42_RS02365 are separated by 15 nucleotides RR42_RS02365 and RR42_RS02370 are separated by 10 nucleotides RR42_RS02370 and RR42_RS02375 are separated by 398 nucleotides
RR42_RS02355: RR42_RS02355 - ATPase, at 527,703 to 528,599
_RS02355
RR42_RS02360: RR42_RS02360 - carbon monoxide dehydrogenase, at 528,727 to 529,527
_RS02360
RR42_RS02365: RR42_RS02365 - carbon monoxide dehydrogenase, at 529,543 to 531,924
_RS02365
RR42_RS02370: RR42_RS02370 - carbon monoxide dehydrogenase, at 531,935 to 532,417
_RS02370
RR42_RS02375: RR42_RS02375 - membrane protein, at 532,816 to 533,394
_RS02375
Position (kb) 529
530
531
532 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 528.547 kb on + strand at 528.547 kb on + strand at 529.010 kb on + strand, within RR42_RS02360 at 529.010 kb on + strand, within RR42_RS02360 at 529.011 kb on - strand, within RR42_RS02360 at 529.079 kb on + strand, within RR42_RS02360 at 529.376 kb on - strand, within RR42_RS02360 at 529.408 kb on + strand, within RR42_RS02360 at 529.408 kb on + strand, within RR42_RS02360 at 529.448 kb on + strand at 529.523 kb on + strand at 529.523 kb on + strand at 529.523 kb on + strand at 529.524 kb on - strand at 529.524 kb on - strand at 529.524 kb on - strand at 529.549 kb on - strand at 529.699 kb on + strand at 529.700 kb on - strand at 529.784 kb on + strand, within RR42_RS02365 at 529.785 kb on - strand, within RR42_RS02365 at 529.785 kb on - strand, within RR42_RS02365 at 529.785 kb on - strand, within RR42_RS02365 at 529.830 kb on - strand, within RR42_RS02365 at 529.830 kb on - strand, within RR42_RS02365 at 529.883 kb on - strand, within RR42_RS02365 at 529.883 kb on - strand, within RR42_RS02365 at 530.009 kb on + strand, within RR42_RS02365 at 530.009 kb on + strand, within RR42_RS02365 at 530.009 kb on + strand, within RR42_RS02365 at 530.009 kb on + strand, within RR42_RS02365 at 530.009 kb on + strand, within RR42_RS02365 at 530.010 kb on - strand, within RR42_RS02365 at 530.010 kb on - strand, within RR42_RS02365 at 530.010 kb on - strand, within RR42_RS02365 at 530.090 kb on + strand, within RR42_RS02365 at 530.090 kb on + strand, within RR42_RS02365 at 530.090 kb on + strand, within RR42_RS02365 at 530.282 kb on + strand, within RR42_RS02365 at 530.282 kb on + strand, within RR42_RS02365 at 530.282 kb on + strand, within RR42_RS02365 at 530.283 kb on - strand, within RR42_RS02365 at 530.534 kb on + strand, within RR42_RS02365 at 530.535 kb on - strand, within RR42_RS02365 at 530.543 kb on + strand, within RR42_RS02365 at 530.646 kb on - strand, within RR42_RS02365 at 530.661 kb on - strand, within RR42_RS02365 at 530.777 kb on + strand, within RR42_RS02365 at 530.777 kb on + strand, within RR42_RS02365 at 530.778 kb on - strand, within RR42_RS02365 at 530.778 kb on - strand, within RR42_RS02365 at 530.855 kb on + strand, within RR42_RS02365 at 530.855 kb on + strand, within RR42_RS02365 at 530.855 kb on + strand, within RR42_RS02365 at 530.856 kb on - strand, within RR42_RS02365 at 530.873 kb on + strand, within RR42_RS02365 at 530.897 kb on + strand, within RR42_RS02365 at 531.253 kb on + strand, within RR42_RS02365 at 531.254 kb on - strand, within RR42_RS02365 at 531.254 kb on - strand, within RR42_RS02365 at 531.257 kb on + strand, within RR42_RS02365 at 531.257 kb on + strand, within RR42_RS02365 at 531.258 kb on - strand, within RR42_RS02365 at 531.258 kb on - strand, within RR42_RS02365 at 531.258 kb on - strand, within RR42_RS02365 at 531.258 kb on - strand, within RR42_RS02365 at 531.258 kb on - strand, within RR42_RS02365 at 531.258 kb on - strand, within RR42_RS02365 at 531.258 kb on - strand, within RR42_RS02365 at 531.266 kb on + strand, within RR42_RS02365 at 531.266 kb on + strand, within RR42_RS02365 at 531.266 kb on + strand, within RR42_RS02365 at 531.267 kb on - strand, within RR42_RS02365 at 531.287 kb on + strand, within RR42_RS02365 at 531.419 kb on + strand, within RR42_RS02365 at 531.419 kb on + strand, within RR42_RS02365 at 531.419 kb on + strand, within RR42_RS02365 at 531.420 kb on - strand, within RR42_RS02365 at 531.420 kb on - strand, within RR42_RS02365 at 531.420 kb on - strand, within RR42_RS02365 at 531.506 kb on + strand, within RR42_RS02365 at 531.806 kb on + strand at 531.839 kb on + strand at 531.866 kb on + strand at 531.866 kb on + strand at 531.867 kb on - strand at 532.364 kb on + strand, within RR42_RS02370 at 532.521 kb on + strand at 532.522 kb on - strand at 532.545 kb on + strand at 532.554 kb on - strand at 532.626 kb on + strand at 532.627 kb on - strand at 532.627 kb on - strand at 532.627 kb on - strand at 532.731 kb on - strand at 532.731 kb on - strand at 532.813 kb on + strand at 532.813 kb on + strand at 532.813 kb on + strand at 532.814 kb on - strand at 532.815 kb on + strand at 532.815 kb on + strand at 532.815 kb on + strand at 532.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 528,547 + +0.3 528,547 + +0.2 529,010 + RR42_RS02360 0.35 -0.7 529,010 + RR42_RS02360 0.35 -0.7 529,011 - RR42_RS02360 0.35 +0.5 529,079 + RR42_RS02360 0.44 -2.0 529,376 - RR42_RS02360 0.81 -0.9 529,408 + RR42_RS02360 0.85 -0.2 529,408 + RR42_RS02360 0.85 +2.9 529,448 + -0.7 529,523 + -1.4 529,523 + -0.1 529,523 + -1.2 529,524 - +0.9 529,524 - -0.2 529,524 - -0.1 529,549 - +1.8 529,699 + +0.9 529,700 - +1.1 529,784 + RR42_RS02365 0.10 +0.9 529,785 - RR42_RS02365 0.10 -1.2 529,785 - RR42_RS02365 0.10 +2.1 529,785 - RR42_RS02365 0.10 -0.4 529,830 - RR42_RS02365 0.12 -1.3 529,830 - RR42_RS02365 0.12 -0.2 529,883 - RR42_RS02365 0.14 +1.3 529,883 - RR42_RS02365 0.14 -0.2 530,009 + RR42_RS02365 0.20 +0.3 530,009 + RR42_RS02365 0.20 +1.1 530,009 + RR42_RS02365 0.20 -1.1 530,009 + RR42_RS02365 0.20 -0.2 530,009 + RR42_RS02365 0.20 +0.3 530,010 - RR42_RS02365 0.20 +0.9 530,010 - RR42_RS02365 0.20 +1.1 530,010 - RR42_RS02365 0.20 +0.1 530,090 + RR42_RS02365 0.23 -0.2 530,090 + RR42_RS02365 0.23 +2.1 530,090 + RR42_RS02365 0.23 +1.1 530,282 + RR42_RS02365 0.31 +0.0 530,282 + RR42_RS02365 0.31 +0.4 530,282 + RR42_RS02365 0.31 -1.1 530,283 - RR42_RS02365 0.31 -1.2 530,534 + RR42_RS02365 0.42 +0.5 530,535 - RR42_RS02365 0.42 +0.8 530,543 + RR42_RS02365 0.42 -0.8 530,646 - RR42_RS02365 0.46 +0.1 530,661 - RR42_RS02365 0.47 +0.5 530,777 + RR42_RS02365 0.52 -1.0 530,777 + RR42_RS02365 0.52 +0.0 530,778 - RR42_RS02365 0.52 -2.1 530,778 - RR42_RS02365 0.52 -0.2 530,855 + RR42_RS02365 0.55 -1.8 530,855 + RR42_RS02365 0.55 -0.7 530,855 + RR42_RS02365 0.55 -0.6 530,856 - RR42_RS02365 0.55 +0.3 530,873 + RR42_RS02365 0.56 +1.0 530,897 + RR42_RS02365 0.57 -0.0 531,253 + RR42_RS02365 0.72 +0.7 531,254 - RR42_RS02365 0.72 +0.7 531,254 - RR42_RS02365 0.72 +1.0 531,257 + RR42_RS02365 0.72 +2.1 531,257 + RR42_RS02365 0.72 +0.1 531,258 - RR42_RS02365 0.72 +2.1 531,258 - RR42_RS02365 0.72 +0.3 531,258 - RR42_RS02365 0.72 +0.6 531,258 - RR42_RS02365 0.72 -0.3 531,258 - RR42_RS02365 0.72 -0.9 531,258 - RR42_RS02365 0.72 -1.1 531,258 - RR42_RS02365 0.72 +0.4 531,266 + RR42_RS02365 0.72 +2.1 531,266 + RR42_RS02365 0.72 +0.3 531,266 + RR42_RS02365 0.72 +0.5 531,267 - RR42_RS02365 0.72 -1.1 531,287 + RR42_RS02365 0.73 +1.2 531,419 + RR42_RS02365 0.79 -0.6 531,419 + RR42_RS02365 0.79 +0.5 531,419 + RR42_RS02365 0.79 +0.5 531,420 - RR42_RS02365 0.79 +0.1 531,420 - RR42_RS02365 0.79 +0.2 531,420 - RR42_RS02365 0.79 +1.7 531,506 + RR42_RS02365 0.82 +0.7 531,806 + +0.1 531,839 + -1.3 531,866 + -0.7 531,866 + +3.1 531,867 - -0.9 532,364 + RR42_RS02370 0.89 +1.8 532,521 + -0.2 532,522 - +1.1 532,545 + +0.5 532,554 - +0.1 532,626 + +1.0 532,627 - +2.0 532,627 - -1.0 532,627 - -0.6 532,731 - +0.0 532,731 - +0.1 532,813 + -0.5 532,813 + -0.5 532,813 + -1.1 532,814 - +0.6 532,815 + +0.1 532,815 + +0.5 532,815 + +0.2 532,819 - +4.9
Or see this region's nucleotide sequence