Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02260 and RR42_RS02265 are separated by 343 nucleotides RR42_RS02265 and RR42_RS02270 are separated by 297 nucleotides RR42_RS02270 and RR42_RS02275 are separated by 119 nucleotides
RR42_RS02260: RR42_RS02260 - cytochrome C peroxidase, at 500,877 to 502,229
_RS02260
RR42_RS02265: RR42_RS02265 - excinuclease ABC subunit A, at 502,573 to 508,392
_RS02265
RR42_RS02270: RR42_RS02270 - hypothetical protein, at 508,690 to 508,974
_RS02270
RR42_RS02275: RR42_RS02275 - aspartate aminotransferase, at 509,094 to 510,287
_RS02275
Position (kb) 502
503
504
505
506
507
508
509 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 501.615 kb on + strand, within RR42_RS02260 at 501.622 kb on - strand, within RR42_RS02260 at 501.634 kb on - strand, within RR42_RS02260 at 501.900 kb on + strand, within RR42_RS02260 at 501.901 kb on - strand, within RR42_RS02260 at 502.107 kb on - strand at 502.107 kb on - strand at 502.270 kb on + strand at 502.271 kb on - strand at 502.426 kb on + strand at 502.445 kb on + strand at 502.547 kb on + strand at 502.547 kb on + strand at 502.548 kb on - strand at 502.558 kb on + strand at 502.559 kb on - strand at 502.984 kb on + strand at 502.985 kb on - strand at 503.105 kb on - strand at 503.266 kb on + strand, within RR42_RS02265 at 503.266 kb on + strand, within RR42_RS02265 at 503.354 kb on - strand, within RR42_RS02265 at 503.655 kb on + strand, within RR42_RS02265 at 503.656 kb on - strand, within RR42_RS02265 at 503.656 kb on - strand, within RR42_RS02265 at 503.656 kb on - strand, within RR42_RS02265 at 503.666 kb on - strand, within RR42_RS02265 at 503.690 kb on - strand, within RR42_RS02265 at 503.690 kb on - strand, within RR42_RS02265 at 503.708 kb on - strand, within RR42_RS02265 at 503.708 kb on - strand, within RR42_RS02265 at 503.719 kb on - strand, within RR42_RS02265 at 503.740 kb on + strand, within RR42_RS02265 at 503.749 kb on + strand, within RR42_RS02265 at 503.750 kb on - strand, within RR42_RS02265 at 503.750 kb on - strand, within RR42_RS02265 at 503.750 kb on - strand, within RR42_RS02265 at 503.750 kb on - strand, within RR42_RS02265 at 503.972 kb on + strand, within RR42_RS02265 at 504.255 kb on + strand, within RR42_RS02265 at 504.751 kb on + strand, within RR42_RS02265 at 504.752 kb on - strand, within RR42_RS02265 at 504.752 kb on - strand, within RR42_RS02265 at 504.817 kb on + strand, within RR42_RS02265 at 504.818 kb on - strand, within RR42_RS02265 at 504.819 kb on + strand, within RR42_RS02265 at 504.919 kb on + strand, within RR42_RS02265 at 505.127 kb on - strand, within RR42_RS02265 at 505.127 kb on - strand, within RR42_RS02265 at 505.195 kb on + strand, within RR42_RS02265 at 505.224 kb on + strand, within RR42_RS02265 at 505.517 kb on - strand, within RR42_RS02265 at 505.948 kb on + strand, within RR42_RS02265 at 505.949 kb on - strand, within RR42_RS02265 at 505.949 kb on - strand, within RR42_RS02265 at 505.949 kb on - strand, within RR42_RS02265 at 505.949 kb on - strand, within RR42_RS02265 at 506.041 kb on + strand, within RR42_RS02265 at 506.041 kb on + strand, within RR42_RS02265 at 506.041 kb on + strand, within RR42_RS02265 at 506.098 kb on + strand, within RR42_RS02265 at 506.428 kb on + strand, within RR42_RS02265 at 506.429 kb on - strand, within RR42_RS02265 at 506.458 kb on + strand, within RR42_RS02265 at 506.840 kb on - strand, within RR42_RS02265 at 506.939 kb on - strand, within RR42_RS02265 at 507.283 kb on - strand, within RR42_RS02265 at 507.649 kb on + strand, within RR42_RS02265 at 507.649 kb on + strand, within RR42_RS02265 at 507.649 kb on + strand, within RR42_RS02265 at 507.649 kb on + strand, within RR42_RS02265 at 507.650 kb on - strand, within RR42_RS02265 at 507.650 kb on - strand, within RR42_RS02265 at 507.650 kb on - strand, within RR42_RS02265 at 507.651 kb on + strand, within RR42_RS02265 at 507.652 kb on - strand, within RR42_RS02265 at 507.955 kb on - strand at 507.997 kb on + strand at 508.126 kb on + strand at 508.126 kb on + strand at 508.127 kb on - strand at 508.127 kb on - strand at 508.871 kb on - strand, within RR42_RS02270 at 509.033 kb on + strand at 509.075 kb on + strand at 509.076 kb on - strand at 509.305 kb on - strand, within RR42_RS02275 at 509.305 kb on - strand, within RR42_RS02275
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 501,615 + RR42_RS02260 0.55 -0.1 501,622 - RR42_RS02260 0.55 +1.7 501,634 - RR42_RS02260 0.56 -0.6 501,900 + RR42_RS02260 0.76 -1.3 501,901 - RR42_RS02260 0.76 -1.1 502,107 - -0.8 502,107 - +0.2 502,270 + -0.1 502,271 - -0.1 502,426 + +1.1 502,445 + +0.6 502,547 + +1.4 502,547 + -2.7 502,548 - -0.1 502,558 + +1.5 502,559 - +1.2 502,984 + -0.1 502,985 - +0.3 503,105 - +0.5 503,266 + RR42_RS02265 0.12 -1.5 503,266 + RR42_RS02265 0.12 +0.1 503,354 - RR42_RS02265 0.13 -1.2 503,655 + RR42_RS02265 0.19 +0.2 503,656 - RR42_RS02265 0.19 -0.0 503,656 - RR42_RS02265 0.19 -0.1 503,656 - RR42_RS02265 0.19 +1.9 503,666 - RR42_RS02265 0.19 -1.0 503,690 - RR42_RS02265 0.19 +3.1 503,690 - RR42_RS02265 0.19 -1.0 503,708 - RR42_RS02265 0.20 +0.5 503,708 - RR42_RS02265 0.20 -0.6 503,719 - RR42_RS02265 0.20 -0.0 503,740 + RR42_RS02265 0.20 -0.3 503,749 + RR42_RS02265 0.20 +0.7 503,750 - RR42_RS02265 0.20 +0.2 503,750 - RR42_RS02265 0.20 +0.0 503,750 - RR42_RS02265 0.20 -0.9 503,750 - RR42_RS02265 0.20 +1.0 503,972 + RR42_RS02265 0.24 +0.3 504,255 + RR42_RS02265 0.29 -1.2 504,751 + RR42_RS02265 0.37 +2.4 504,752 - RR42_RS02265 0.37 -2.2 504,752 - RR42_RS02265 0.37 +0.1 504,817 + RR42_RS02265 0.39 +0.1 504,818 - RR42_RS02265 0.39 -0.2 504,819 + RR42_RS02265 0.39 -0.6 504,919 + RR42_RS02265 0.40 -0.2 505,127 - RR42_RS02265 0.44 -0.1 505,127 - RR42_RS02265 0.44 -0.7 505,195 + RR42_RS02265 0.45 +0.7 505,224 + RR42_RS02265 0.46 +0.5 505,517 - RR42_RS02265 0.51 +0.6 505,948 + RR42_RS02265 0.58 +0.3 505,949 - RR42_RS02265 0.58 -0.0 505,949 - RR42_RS02265 0.58 +0.1 505,949 - RR42_RS02265 0.58 -0.1 505,949 - RR42_RS02265 0.58 +0.9 506,041 + RR42_RS02265 0.60 -0.6 506,041 + RR42_RS02265 0.60 +3.1 506,041 + RR42_RS02265 0.60 +1.4 506,098 + RR42_RS02265 0.61 +0.2 506,428 + RR42_RS02265 0.66 -0.5 506,429 - RR42_RS02265 0.66 +0.8 506,458 + RR42_RS02265 0.67 +1.6 506,840 - RR42_RS02265 0.73 +1.4 506,939 - RR42_RS02265 0.75 +0.8 507,283 - RR42_RS02265 0.81 +0.2 507,649 + RR42_RS02265 0.87 +2.8 507,649 + RR42_RS02265 0.87 +0.7 507,649 + RR42_RS02265 0.87 +0.5 507,649 + RR42_RS02265 0.87 -0.4 507,650 - RR42_RS02265 0.87 +0.6 507,650 - RR42_RS02265 0.87 -0.4 507,650 - RR42_RS02265 0.87 +0.0 507,651 + RR42_RS02265 0.87 -1.0 507,652 - RR42_RS02265 0.87 +0.6 507,955 - +1.1 507,997 + +1.3 508,126 + -1.2 508,126 + -0.2 508,127 - -0.7 508,127 - -0.2 508,871 - RR42_RS02270 0.64 +0.7 509,033 + +0.8 509,075 + +1.5 509,076 - +0.4 509,305 - RR42_RS02275 0.18 -1.1 509,305 - RR42_RS02275 0.18 +0.4
Or see this region's nucleotide sequence