Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01975 and RR42_RS01980 are separated by 60 nucleotides RR42_RS01980 and RR42_RS01985 are separated by 24 nucleotides
RR42_RS01975: RR42_RS01975 - cell division protein FtsY, at 441,713 to 442,858
_RS01975
RR42_RS01980: RR42_RS01980 - peptidase M16, at 442,919 to 444,445
_RS01980
RR42_RS01985: RR42_RS01985 - zinc protease, at 444,470 to 445,831
_RS01985
Position (kb) 442
443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 442.904 kb on - strand at 443.066 kb on + strand at 443.067 kb on - strand at 443.067 kb on - strand at 443.067 kb on - strand at 443.067 kb on - strand at 443.147 kb on - strand, within RR42_RS01980 at 443.214 kb on + strand, within RR42_RS01980 at 443.263 kb on + strand, within RR42_RS01980 at 443.308 kb on + strand, within RR42_RS01980 at 443.399 kb on + strand, within RR42_RS01980 at 443.399 kb on + strand, within RR42_RS01980 at 443.400 kb on - strand, within RR42_RS01980 at 443.400 kb on - strand, within RR42_RS01980 at 443.400 kb on - strand, within RR42_RS01980 at 443.400 kb on - strand, within RR42_RS01980 at 443.403 kb on - strand, within RR42_RS01980 at 443.403 kb on - strand, within RR42_RS01980 at 443.403 kb on - strand, within RR42_RS01980 at 443.423 kb on + strand, within RR42_RS01980 at 443.423 kb on + strand, within RR42_RS01980 at 443.423 kb on + strand, within RR42_RS01980 at 443.423 kb on + strand, within RR42_RS01980 at 443.424 kb on - strand, within RR42_RS01980 at 443.424 kb on - strand, within RR42_RS01980 at 443.424 kb on - strand, within RR42_RS01980 at 443.424 kb on - strand, within RR42_RS01980 at 443.424 kb on - strand, within RR42_RS01980 at 443.424 kb on - strand, within RR42_RS01980 at 443.562 kb on - strand, within RR42_RS01980 at 443.585 kb on + strand, within RR42_RS01980 at 443.586 kb on - strand, within RR42_RS01980 at 443.586 kb on - strand, within RR42_RS01980 at 443.586 kb on - strand, within RR42_RS01980 at 443.669 kb on + strand, within RR42_RS01980 at 443.669 kb on + strand, within RR42_RS01980 at 443.681 kb on + strand, within RR42_RS01980 at 443.681 kb on + strand, within RR42_RS01980 at 443.681 kb on + strand, within RR42_RS01980 at 443.681 kb on + strand, within RR42_RS01980 at 443.682 kb on - strand, within RR42_RS01980 at 443.710 kb on - strand, within RR42_RS01980 at 443.759 kb on + strand, within RR42_RS01980 at 443.759 kb on + strand, within RR42_RS01980 at 443.864 kb on + strand, within RR42_RS01980 at 443.864 kb on + strand, within RR42_RS01980 at 443.864 kb on + strand, within RR42_RS01980 at 443.864 kb on + strand, within RR42_RS01980 at 443.865 kb on - strand, within RR42_RS01980 at 443.865 kb on - strand, within RR42_RS01980 at 443.865 kb on - strand, within RR42_RS01980 at 443.865 kb on - strand, within RR42_RS01980 at 443.879 kb on + strand, within RR42_RS01980 at 443.879 kb on + strand, within RR42_RS01980 at 443.879 kb on + strand, within RR42_RS01980 at 443.880 kb on - strand, within RR42_RS01980 at 443.880 kb on - strand, within RR42_RS01980 at 443.960 kb on + strand, within RR42_RS01980 at 444.029 kb on + strand, within RR42_RS01980 at 444.029 kb on + strand, within RR42_RS01980 at 444.030 kb on - strand, within RR42_RS01980 at 444.092 kb on - strand, within RR42_RS01980 at 444.092 kb on - strand, within RR42_RS01980 at 444.092 kb on - strand, within RR42_RS01980 at 444.092 kb on - strand, within RR42_RS01980 at 444.206 kb on + strand, within RR42_RS01980 at 444.206 kb on + strand, within RR42_RS01980 at 444.207 kb on - strand, within RR42_RS01980 at 444.347 kb on + strand at 444.347 kb on + strand at 444.348 kb on - strand at 444.348 kb on - strand at 444.452 kb on + strand at 444.453 kb on - strand at 444.453 kb on - strand at 444.620 kb on + strand, within RR42_RS01985 at 444.621 kb on - strand, within RR42_RS01985 at 444.661 kb on + strand, within RR42_RS01985 at 444.661 kb on + strand, within RR42_RS01985 at 444.686 kb on + strand, within RR42_RS01985 at 445.044 kb on - strand, within RR42_RS01985 at 445.044 kb on - strand, within RR42_RS01985 at 445.313 kb on - strand, within RR42_RS01985 at 445.317 kb on + strand, within RR42_RS01985 at 445.358 kb on + strand, within RR42_RS01985 at 445.358 kb on + strand, within RR42_RS01985 at 445.358 kb on + strand, within RR42_RS01985 at 445.359 kb on - strand, within RR42_RS01985 at 445.359 kb on - strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 442,904 - +1.1 443,066 + -0.0 443,067 - -2.4 443,067 - -2.9 443,067 - -0.3 443,067 - +1.9 443,147 - RR42_RS01980 0.15 -0.8 443,214 + RR42_RS01980 0.19 -0.8 443,263 + RR42_RS01980 0.23 -2.3 443,308 + RR42_RS01980 0.25 -1.1 443,399 + RR42_RS01980 0.31 -1.1 443,399 + RR42_RS01980 0.31 -1.9 443,400 - RR42_RS01980 0.31 +0.5 443,400 - RR42_RS01980 0.31 -1.4 443,400 - RR42_RS01980 0.31 +0.1 443,400 - RR42_RS01980 0.31 -0.2 443,403 - RR42_RS01980 0.32 -2.0 443,403 - RR42_RS01980 0.32 -0.7 443,403 - RR42_RS01980 0.32 -0.8 443,423 + RR42_RS01980 0.33 -0.4 443,423 + RR42_RS01980 0.33 +0.5 443,423 + RR42_RS01980 0.33 +0.9 443,423 + RR42_RS01980 0.33 -0.3 443,424 - RR42_RS01980 0.33 -0.9 443,424 - RR42_RS01980 0.33 -1.2 443,424 - RR42_RS01980 0.33 -0.9 443,424 - RR42_RS01980 0.33 -0.2 443,424 - RR42_RS01980 0.33 -1.3 443,424 - RR42_RS01980 0.33 -1.3 443,562 - RR42_RS01980 0.42 -1.7 443,585 + RR42_RS01980 0.44 -0.7 443,586 - RR42_RS01980 0.44 -0.7 443,586 - RR42_RS01980 0.44 -1.1 443,586 - RR42_RS01980 0.44 -0.5 443,669 + RR42_RS01980 0.49 +0.5 443,669 + RR42_RS01980 0.49 -0.5 443,681 + RR42_RS01980 0.50 +0.1 443,681 + RR42_RS01980 0.50 +0.9 443,681 + RR42_RS01980 0.50 -3.0 443,681 + RR42_RS01980 0.50 -1.5 443,682 - RR42_RS01980 0.50 +0.4 443,710 - RR42_RS01980 0.52 -0.6 443,759 + RR42_RS01980 0.55 -1.8 443,759 + RR42_RS01980 0.55 -0.3 443,864 + RR42_RS01980 0.62 +1.1 443,864 + RR42_RS01980 0.62 +0.9 443,864 + RR42_RS01980 0.62 +0.2 443,864 + RR42_RS01980 0.62 -1.6 443,865 - RR42_RS01980 0.62 +1.1 443,865 - RR42_RS01980 0.62 -1.0 443,865 - RR42_RS01980 0.62 +1.0 443,865 - RR42_RS01980 0.62 -0.1 443,879 + RR42_RS01980 0.63 +0.6 443,879 + RR42_RS01980 0.63 -1.4 443,879 + RR42_RS01980 0.63 -1.3 443,880 - RR42_RS01980 0.63 -2.1 443,880 - RR42_RS01980 0.63 +0.2 443,960 + RR42_RS01980 0.68 -0.0 444,029 + RR42_RS01980 0.73 -0.9 444,029 + RR42_RS01980 0.73 -0.9 444,030 - RR42_RS01980 0.73 -2.9 444,092 - RR42_RS01980 0.77 -0.2 444,092 - RR42_RS01980 0.77 +0.3 444,092 - RR42_RS01980 0.77 +0.5 444,092 - RR42_RS01980 0.77 +0.7 444,206 + RR42_RS01980 0.84 +0.4 444,206 + RR42_RS01980 0.84 -1.5 444,207 - RR42_RS01980 0.84 +0.6 444,347 + -0.6 444,347 + -1.1 444,348 - +0.9 444,348 - -0.6 444,452 + +1.4 444,453 - +0.9 444,453 - -0.6 444,620 + RR42_RS01985 0.11 -0.2 444,621 - RR42_RS01985 0.11 -1.0 444,661 + RR42_RS01985 0.14 -1.7 444,661 + RR42_RS01985 0.14 +0.5 444,686 + RR42_RS01985 0.16 +1.1 445,044 - RR42_RS01985 0.42 -0.5 445,044 - RR42_RS01985 0.42 -1.0 445,313 - RR42_RS01985 0.62 -0.3 445,317 + RR42_RS01985 0.62 -0.7 445,358 + RR42_RS01985 0.65 -2.2 445,358 + RR42_RS01985 0.65 -2.2 445,358 + RR42_RS01985 0.65 -0.2 445,359 - RR42_RS01985 0.65 +0.1 445,359 - RR42_RS01985 0.65 -1.3 445,382 + RR42_RS01985 0.67 -1.5 445,382 + RR42_RS01985 0.67 +0.8 445,382 + RR42_RS01985 0.67 +0.8 445,382 + RR42_RS01985 0.67 +0.4 445,382 + RR42_RS01985 0.67 -1.8 445,383 - RR42_RS01985 0.67 -1.1 445,383 - RR42_RS01985 0.67 -0.5 445,383 - RR42_RS01985 0.67 -2.2 445,383 - RR42_RS01985 0.67 +0.2 445,383 - RR42_RS01985 0.67 +0.3 445,383 - RR42_RS01985 0.67 -1.3 445,383 - RR42_RS01985 0.67 -1.2
Or see this region's nucleotide sequence