Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19195

Experiment: LB 0.5x with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS19185 and BWI76_RS19190 overlap by 1 nucleotidesBWI76_RS19190 and BWI76_RS19195 overlap by 4 nucleotidesBWI76_RS19195 and BWI76_RS19200 overlap by 4 nucleotidesBWI76_RS19200 and BWI76_RS19205 overlap by 1 nucleotides BWI76_RS19185: BWI76_RS19185 - ABC transporter ATP-binding protein, at 3,993,449 to 3,994,483 _RS19185 BWI76_RS19190: BWI76_RS19190 - oligopeptide/dipeptide ABC transporter ATPase, at 3,994,483 to 3,995,463 _RS19190 BWI76_RS19195: BWI76_RS19195 - nickel ABC transporter permease, at 3,995,460 to 3,996,306 _RS19195 BWI76_RS19200: BWI76_RS19200 - binding-protein-dependent transport system inner membrane protein, at 3,996,303 to 3,997,241 _RS19200 BWI76_RS19205: BWI76_RS19205 - putative proline iminopeptidase, at 3,997,241 to 3,998,140 _RS19205 Position (kb) 3995 3996 3997Strain fitness (log2 ratio) -1 0 1 2 3at 3994.473 kb on + strandat 3994.625 kb on + strand, within BWI76_RS19190at 3994.729 kb on - strand, within BWI76_RS19190at 3994.914 kb on + strand, within BWI76_RS19190at 3995.142 kb on + strand, within BWI76_RS19190at 3995.398 kb on - strandat 3995.504 kb on + strandat 3995.621 kb on + strand, within BWI76_RS19195at 3995.880 kb on - strand, within BWI76_RS19195at 3995.929 kb on + strand, within BWI76_RS19195at 3996.076 kb on - strand, within BWI76_RS19195at 3996.078 kb on - strand, within BWI76_RS19195at 3996.374 kb on + strandat 3996.433 kb on + strand, within BWI76_RS19200at 3996.586 kb on + strand, within BWI76_RS19200at 3996.654 kb on + strand, within BWI76_RS19200at 3996.968 kb on + strand, within BWI76_RS19200at 3997.091 kb on - strand, within BWI76_RS19200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
remove
3,994,473 + -0.5
3,994,625 + BWI76_RS19190 0.14 -0.0
3,994,729 - BWI76_RS19190 0.25 -0.4
3,994,914 + BWI76_RS19190 0.44 -0.4
3,995,142 + BWI76_RS19190 0.67 +0.2
3,995,398 - +3.3
3,995,504 + -1.6
3,995,621 + BWI76_RS19195 0.19 -1.5
3,995,880 - BWI76_RS19195 0.50 -0.9
3,995,929 + BWI76_RS19195 0.55 +1.5
3,996,076 - BWI76_RS19195 0.73 -0.6
3,996,078 - BWI76_RS19195 0.73 +0.1
3,996,374 + -0.4
3,996,433 + BWI76_RS19200 0.14 -0.4
3,996,586 + BWI76_RS19200 0.30 -0.0
3,996,654 + BWI76_RS19200 0.37 -0.7
3,996,968 + BWI76_RS19200 0.71 -0.0
3,997,091 - BWI76_RS19200 0.84 -0.7

Or see this region's nucleotide sequence