Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.0015625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0480 and BT0481 are separated by 53 nucleotides BT0481 and BT0482 are separated by 12 nucleotides BT0482 and BT0483 are separated by 250 nucleotides
BT0480: BT0480 - glycosyltransferase (NCBI ptt file), at 590,713 to 592,119
BT0480
BT0481: BT0481 - polysaccharide export outer membrane protein (NCBI ptt file), at 592,173 to 592,973
BT0481
BT0482: BT0482 - tyrosine-protein kinase ptk (NCBI ptt file), at 592,986 to 595,424
BT0482
BT0483: BT0483 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 595,675 to 598,419
BT0483
Position (kb) 592
593
594
595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 592.083 kb on - strand at 592.115 kb on - strand at 592.172 kb on + strand at 592.255 kb on - strand, within BT0481 at 592.419 kb on - strand, within BT0481 at 592.422 kb on - strand, within BT0481 at 592.470 kb on - strand, within BT0481 at 592.495 kb on + strand, within BT0481 at 592.738 kb on + strand, within BT0481 at 592.822 kb on - strand, within BT0481 at 592.910 kb on - strand at 593.061 kb on - strand at 593.111 kb on + strand at 593.128 kb on - strand at 593.156 kb on + strand at 593.236 kb on + strand, within BT0482 at 593.334 kb on + strand, within BT0482 at 593.335 kb on - strand, within BT0482 at 593.338 kb on + strand, within BT0482 at 593.345 kb on + strand, within BT0482 at 593.375 kb on + strand, within BT0482 at 593.511 kb on + strand, within BT0482 at 593.631 kb on - strand, within BT0482 at 593.633 kb on - strand, within BT0482 at 593.671 kb on + strand, within BT0482 at 593.682 kb on + strand, within BT0482 at 593.753 kb on + strand, within BT0482 at 593.753 kb on + strand, within BT0482 at 593.802 kb on - strand, within BT0482 at 593.868 kb on - strand, within BT0482 at 593.873 kb on + strand, within BT0482 at 593.877 kb on - strand, within BT0482 at 594.030 kb on - strand, within BT0482 at 594.049 kb on - strand, within BT0482 at 594.050 kb on + strand, within BT0482 at 594.088 kb on + strand, within BT0482 at 594.161 kb on - strand, within BT0482 at 594.163 kb on + strand, within BT0482 at 594.356 kb on - strand, within BT0482 at 595.093 kb on + strand, within BT0482 at 595.202 kb on - strand at 595.275 kb on - strand at 595.330 kb on - strand at 595.333 kb on - strand at 595.451 kb on + strand at 595.486 kb on + strand at 595.486 kb on + strand at 595.487 kb on - strand at 595.556 kb on + strand at 595.575 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.0015625 mM remove 592,083 - +1.0 592,115 - -1.3 592,172 + -1.0 592,255 - BT0481 0.10 -1.0 592,419 - BT0481 0.31 -1.5 592,422 - BT0481 0.31 -1.0 592,470 - BT0481 0.37 -0.3 592,495 + BT0481 0.40 -1.6 592,738 + BT0481 0.71 +1.0 592,822 - BT0481 0.81 +0.6 592,910 - +0.0 593,061 - +0.0 593,111 + +0.0 593,128 - +0.6 593,156 + -1.2 593,236 + BT0482 0.10 -2.3 593,334 + BT0482 0.14 -1.0 593,335 - BT0482 0.14 -1.9 593,338 + BT0482 0.14 +0.0 593,345 + BT0482 0.15 -1.0 593,375 + BT0482 0.16 -1.0 593,511 + BT0482 0.22 -0.5 593,631 - BT0482 0.26 -1.5 593,633 - BT0482 0.27 +1.6 593,671 + BT0482 0.28 -2.0 593,682 + BT0482 0.29 -0.2 593,753 + BT0482 0.31 -1.8 593,753 + BT0482 0.31 -2.8 593,802 - BT0482 0.33 -0.7 593,868 - BT0482 0.36 -1.8 593,873 + BT0482 0.36 -1.0 593,877 - BT0482 0.37 -2.8 594,030 - BT0482 0.43 +1.6 594,049 - BT0482 0.44 +0.0 594,050 + BT0482 0.44 -1.8 594,088 + BT0482 0.45 +1.0 594,161 - BT0482 0.48 -0.7 594,163 + BT0482 0.48 -2.5 594,356 - BT0482 0.56 -1.0 595,093 + BT0482 0.86 -2.5 595,202 - -1.0 595,275 - +0.6 595,330 - -2.5 595,333 - -0.5 595,451 + -0.2 595,486 + -0.2 595,486 + -0.7 595,487 - -2.0 595,556 + -1.1 595,575 + +1.0
Or see this region's nucleotide sequence