Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24875

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24870 and RR42_RS24875 are separated by 449 nucleotidesRR42_RS24875 and RR42_RS24880 overlap by 8 nucleotidesRR42_RS24880 and RR42_RS24885 are separated by 40 nucleotides RR42_RS24870: RR42_RS24870 - membrane protein, at 917,913 to 919,076 _RS24870 RR42_RS24875: RR42_RS24875 - IclR family transcriptional regulator, at 919,526 to 920,332 _RS24875 RR42_RS24880: RR42_RS24880 - hypothetical protein, at 920,325 to 920,600 _RS24880 RR42_RS24885: RR42_RS24885 - IclR family transcriptional regulator, at 920,641 to 921,420 _RS24885 Position (kb) 919 920 921Strain fitness (log2 ratio) -2 -1 0 1 2at 918.553 kb on - strand, within RR42_RS24870at 918.570 kb on + strand, within RR42_RS24870at 918.570 kb on + strand, within RR42_RS24870at 918.571 kb on - strand, within RR42_RS24870at 918.571 kb on - strand, within RR42_RS24870at 918.604 kb on - strand, within RR42_RS24870at 918.672 kb on + strand, within RR42_RS24870at 918.672 kb on + strand, within RR42_RS24870at 918.673 kb on - strand, within RR42_RS24870at 918.673 kb on - strand, within RR42_RS24870at 918.759 kb on + strand, within RR42_RS24870at 918.763 kb on - strand, within RR42_RS24870at 918.851 kb on + strand, within RR42_RS24870at 918.894 kb on + strand, within RR42_RS24870at 918.894 kb on + strand, within RR42_RS24870at 918.922 kb on - strand, within RR42_RS24870at 918.922 kb on - strand, within RR42_RS24870at 919.011 kb on + strandat 919.011 kb on + strandat 919.016 kb on - strandat 919.074 kb on + strandat 919.075 kb on - strandat 919.088 kb on - strandat 919.140 kb on + strandat 919.248 kb on + strandat 919.273 kb on - strandat 919.520 kb on + strandat 919.521 kb on - strandat 919.757 kb on + strand, within RR42_RS24875at 919.758 kb on - strand, within RR42_RS24875at 919.859 kb on - strand, within RR42_RS24875at 919.864 kb on + strand, within RR42_RS24875at 919.868 kb on + strand, within RR42_RS24875at 919.868 kb on + strand, within RR42_RS24875at 919.869 kb on - strand, within RR42_RS24875at 919.869 kb on - strand, within RR42_RS24875at 919.869 kb on - strand, within RR42_RS24875at 919.924 kb on - strand, within RR42_RS24875at 919.936 kb on - strand, within RR42_RS24875at 920.036 kb on + strand, within RR42_RS24875at 920.036 kb on + strand, within RR42_RS24875at 920.137 kb on + strand, within RR42_RS24875at 920.138 kb on - strand, within RR42_RS24875at 920.344 kb on + strandat 920.514 kb on - strand, within RR42_RS24880at 920.532 kb on - strand, within RR42_RS24880at 920.613 kb on + strandat 920.623 kb on - strandat 920.875 kb on + strand, within RR42_RS24885at 920.876 kb on - strand, within RR42_RS24885at 920.967 kb on + strand, within RR42_RS24885at 920.986 kb on + strand, within RR42_RS24885at 920.986 kb on + strand, within RR42_RS24885at 920.986 kb on + strand, within RR42_RS24885at 920.987 kb on - strand, within RR42_RS24885at 920.987 kb on - strand, within RR42_RS24885at 920.987 kb on - strand, within RR42_RS24885at 921.115 kb on + strand, within RR42_RS24885at 921.115 kb on + strand, within RR42_RS24885at 921.116 kb on - strand, within RR42_RS24885at 921.173 kb on + strand, within RR42_RS24885at 921.173 kb on + strand, within RR42_RS24885at 921.173 kb on + strand, within RR42_RS24885at 921.244 kb on + strand, within RR42_RS24885

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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918,553 - RR42_RS24870 0.55 -0.7
918,570 + RR42_RS24870 0.56 +0.0
918,570 + RR42_RS24870 0.56 +0.7
918,571 - RR42_RS24870 0.57 -0.5
918,571 - RR42_RS24870 0.57 -1.2
918,604 - RR42_RS24870 0.59 +0.2
918,672 + RR42_RS24870 0.65 -0.9
918,672 + RR42_RS24870 0.65 +0.6
918,673 - RR42_RS24870 0.65 -1.6
918,673 - RR42_RS24870 0.65 +0.0
918,759 + RR42_RS24870 0.73 +2.1
918,763 - RR42_RS24870 0.73 +0.3
918,851 + RR42_RS24870 0.81 +2.7
918,894 + RR42_RS24870 0.84 +0.4
918,894 + RR42_RS24870 0.84 +0.9
918,922 - RR42_RS24870 0.87 -0.6
918,922 - RR42_RS24870 0.87 +1.7
919,011 + -0.1
919,011 + -0.3
919,016 - +1.0
919,074 + +0.4
919,075 - +0.1
919,088 - +0.8
919,140 + -0.6
919,248 + -0.5
919,273 - +0.1
919,520 + -0.3
919,521 - -0.2
919,757 + RR42_RS24875 0.29 -0.5
919,758 - RR42_RS24875 0.29 +1.1
919,859 - RR42_RS24875 0.41 -0.5
919,864 + RR42_RS24875 0.42 +0.7
919,868 + RR42_RS24875 0.42 +2.4
919,868 + RR42_RS24875 0.42 +0.5
919,869 - RR42_RS24875 0.43 -1.0
919,869 - RR42_RS24875 0.43 +0.8
919,869 - RR42_RS24875 0.43 -1.2
919,924 - RR42_RS24875 0.49 -0.4
919,936 - RR42_RS24875 0.51 +0.8
920,036 + RR42_RS24875 0.63 +0.6
920,036 + RR42_RS24875 0.63 -0.7
920,137 + RR42_RS24875 0.76 +0.0
920,138 - RR42_RS24875 0.76 +0.1
920,344 + +1.0
920,514 - RR42_RS24880 0.68 +0.6
920,532 - RR42_RS24880 0.75 +0.7
920,613 + +0.6
920,623 - -0.7
920,875 + RR42_RS24885 0.30 +0.1
920,876 - RR42_RS24885 0.30 +0.3
920,967 + RR42_RS24885 0.42 -0.2
920,986 + RR42_RS24885 0.44 +0.1
920,986 + RR42_RS24885 0.44 +0.1
920,986 + RR42_RS24885 0.44 -0.4
920,987 - RR42_RS24885 0.44 +0.1
920,987 - RR42_RS24885 0.44 +1.1
920,987 - RR42_RS24885 0.44 +2.7
921,115 + RR42_RS24885 0.61 -0.6
921,115 + RR42_RS24885 0.61 -0.6
921,116 - RR42_RS24885 0.61 -2.7
921,173 + RR42_RS24885 0.68 +0.9
921,173 + RR42_RS24885 0.68 -1.1
921,173 + RR42_RS24885 0.68 -1.0
921,244 + RR42_RS24885 0.77 +0.1

Or see this region's nucleotide sequence