Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23005

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23000 and RR42_RS23005 overlap by 4 nucleotidesRR42_RS23005 and RR42_RS23010 are separated by 289 nucleotidesRR42_RS23010 and RR42_RS23015 are separated by 163 nucleotides RR42_RS23000: RR42_RS23000 - acylaldehyde oxidase, at 494,518 to 496,803 _RS23000 RR42_RS23005: RR42_RS23005 - hypothetical protein, at 496,800 to 497,303 _RS23005 RR42_RS23010: RR42_RS23010 - hypothetical protein, at 497,593 to 498,051 _RS23010 RR42_RS23015: RR42_RS23015 - hypothetical protein, at 498,215 to 498,757 _RS23015 Position (kb) 496 497 498Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 495.945 kb on + strand, within RR42_RS23000at 495.945 kb on + strand, within RR42_RS23000at 495.945 kb on + strand, within RR42_RS23000at 495.945 kb on + strand, within RR42_RS23000at 495.946 kb on - strand, within RR42_RS23000at 495.946 kb on - strand, within RR42_RS23000at 495.946 kb on - strand, within RR42_RS23000at 495.946 kb on - strand, within RR42_RS23000at 495.946 kb on - strand, within RR42_RS23000at 495.946 kb on - strand, within RR42_RS23000at 496.109 kb on + strand, within RR42_RS23000at 496.109 kb on + strand, within RR42_RS23000at 496.109 kb on + strand, within RR42_RS23000at 496.110 kb on - strand, within RR42_RS23000at 496.110 kb on - strand, within RR42_RS23000at 496.110 kb on - strand, within RR42_RS23000at 496.203 kb on + strand, within RR42_RS23000at 496.204 kb on - strand, within RR42_RS23000at 496.204 kb on - strand, within RR42_RS23000at 496.206 kb on - strand, within RR42_RS23000at 496.206 kb on - strand, within RR42_RS23000at 496.606 kb on + strandat 496.606 kb on + strandat 496.606 kb on + strandat 496.606 kb on + strandat 496.606 kb on + strandat 496.606 kb on + strandat 496.606 kb on + strandat 496.606 kb on + strandat 496.607 kb on - strandat 496.607 kb on - strandat 496.607 kb on - strandat 496.607 kb on - strandat 496.607 kb on - strandat 496.607 kb on - strandat 496.682 kb on + strandat 496.682 kb on + strandat 496.682 kb on + strandat 496.892 kb on + strand, within RR42_RS23005at 496.892 kb on + strand, within RR42_RS23005at 496.892 kb on + strand, within RR42_RS23005at 496.892 kb on + strand, within RR42_RS23005at 496.893 kb on - strand, within RR42_RS23005at 496.893 kb on - strand, within RR42_RS23005at 496.893 kb on - strand, within RR42_RS23005at 496.893 kb on - strand, within RR42_RS23005at 496.894 kb on + strand, within RR42_RS23005at 496.894 kb on + strand, within RR42_RS23005at 496.895 kb on - strand, within RR42_RS23005at 496.895 kb on - strand, within RR42_RS23005at 496.895 kb on - strand, within RR42_RS23005at 496.895 kb on - strand, within RR42_RS23005at 496.895 kb on - strand, within RR42_RS23005at 496.895 kb on - strand, within RR42_RS23005at 497.009 kb on - strand, within RR42_RS23005at 497.098 kb on + strand, within RR42_RS23005at 497.238 kb on + strand, within RR42_RS23005at 497.402 kb on - strandat 497.508 kb on + strandat 497.508 kb on + strandat 497.652 kb on - strand, within RR42_RS23010at 497.652 kb on - strand, within RR42_RS23010at 497.652 kb on - strand, within RR42_RS23010at 497.904 kb on - strand, within RR42_RS23010at 497.904 kb on - strand, within RR42_RS23010at 497.904 kb on - strand, within RR42_RS23010at 497.904 kb on - strand, within RR42_RS23010at 497.937 kb on - strand, within RR42_RS23010at 498.151 kb on + strandat 498.151 kb on + strandat 498.151 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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495,945 + RR42_RS23000 0.62 -1.4
495,945 + RR42_RS23000 0.62 -1.3
495,945 + RR42_RS23000 0.62 +0.6
495,945 + RR42_RS23000 0.62 -1.4
495,946 - RR42_RS23000 0.62 +2.2
495,946 - RR42_RS23000 0.62 +0.1
495,946 - RR42_RS23000 0.62 -0.8
495,946 - RR42_RS23000 0.62 +0.5
495,946 - RR42_RS23000 0.62 -1.8
495,946 - RR42_RS23000 0.62 +0.9
496,109 + RR42_RS23000 0.70 +0.9
496,109 + RR42_RS23000 0.70 -0.9
496,109 + RR42_RS23000 0.70 +0.1
496,110 - RR42_RS23000 0.70 +1.2
496,110 - RR42_RS23000 0.70 -0.6
496,110 - RR42_RS23000 0.70 -0.1
496,203 + RR42_RS23000 0.74 -0.7
496,204 - RR42_RS23000 0.74 -0.2
496,204 - RR42_RS23000 0.74 -0.1
496,206 - RR42_RS23000 0.74 -0.3
496,206 - RR42_RS23000 0.74 +0.9
496,606 + -0.2
496,606 + -1.1
496,606 + +0.3
496,606 + +0.2
496,606 + +0.3
496,606 + +0.2
496,606 + +0.1
496,606 + -0.4
496,607 - +1.1
496,607 - -0.2
496,607 - +0.1
496,607 - -0.2
496,607 - +0.4
496,607 - -0.1
496,682 + -3.2
496,682 + -0.4
496,682 + -0.3
496,892 + RR42_RS23005 0.18 -0.3
496,892 + RR42_RS23005 0.18 -0.4
496,892 + RR42_RS23005 0.18 -0.0
496,892 + RR42_RS23005 0.18 -3.0
496,893 - RR42_RS23005 0.18 -0.1
496,893 - RR42_RS23005 0.18 -0.0
496,893 - RR42_RS23005 0.18 +1.8
496,893 - RR42_RS23005 0.18 -0.3
496,894 + RR42_RS23005 0.19 +0.2
496,894 + RR42_RS23005 0.19 -1.0
496,895 - RR42_RS23005 0.19 -0.3
496,895 - RR42_RS23005 0.19 -0.7
496,895 - RR42_RS23005 0.19 -0.5
496,895 - RR42_RS23005 0.19 +1.2
496,895 - RR42_RS23005 0.19 -0.7
496,895 - RR42_RS23005 0.19 -1.1
497,009 - RR42_RS23005 0.41 -0.1
497,098 + RR42_RS23005 0.59 -0.2
497,238 + RR42_RS23005 0.87 -0.4
497,402 - +0.7
497,508 + -0.7
497,508 + -0.2
497,652 - RR42_RS23010 0.13 -0.3
497,652 - RR42_RS23010 0.13 +0.3
497,652 - RR42_RS23010 0.13 -0.4
497,904 - RR42_RS23010 0.68 -0.5
497,904 - RR42_RS23010 0.68 -0.1
497,904 - RR42_RS23010 0.68 +0.3
497,904 - RR42_RS23010 0.68 -0.6
497,937 - RR42_RS23010 0.75 +0.2
498,151 + +0.6
498,151 + -0.7
498,151 + +1.2

Or see this region's nucleotide sequence