Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19095

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19090 and RR42_RS19095 are separated by 570 nucleotidesRR42_RS19095 and RR42_RS19100 are separated by 330 nucleotides RR42_RS19090: RR42_RS19090 - cytochrome C, at 4,136,587 to 4,137,246 _RS19090 RR42_RS19095: RR42_RS19095 - GTP-binding protein, at 4,137,817 to 4,138,563 _RS19095 RR42_RS19100: RR42_RS19100 - delta-aminolevulinic acid dehydratase, at 4,138,894 to 4,139,886 _RS19100 Position (kb) 4137 4138 4139Strain fitness (log2 ratio) -2 -1 0 1 2at 4137.009 kb on - strand, within RR42_RS19090at 4137.058 kb on - strand, within RR42_RS19090at 4137.457 kb on - strandat 4137.523 kb on - strandat 4137.523 kb on - strandat 4137.523 kb on - strandat 4137.523 kb on - strandat 4137.540 kb on - strandat 4137.579 kb on - strandat 4137.579 kb on - strandat 4137.579 kb on - strandat 4137.640 kb on - strandat 4137.640 kb on - strandat 4137.640 kb on - strandat 4137.640 kb on - strandat 4138.585 kb on - strandat 4138.631 kb on + strandat 4138.632 kb on - strandat 4138.701 kb on - strandat 4138.719 kb on - strandat 4138.719 kb on - strandat 4138.719 kb on - strandat 4138.766 kb on + strandat 4138.767 kb on - strandat 4138.767 kb on - strandat 4138.767 kb on - strandat 4138.771 kb on + strandat 4138.771 kb on + strandat 4138.771 kb on + strandat 4138.792 kb on + strandat 4138.792 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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4,137,009 - RR42_RS19090 0.64 -1.7
4,137,058 - RR42_RS19090 0.71 -1.7
4,137,457 - +1.3
4,137,523 - -1.8
4,137,523 - -1.3
4,137,523 - +0.1
4,137,523 - +0.9
4,137,540 - -0.9
4,137,579 - +0.0
4,137,579 - +0.1
4,137,579 - -0.3
4,137,640 - -0.2
4,137,640 - -1.1
4,137,640 - -0.0
4,137,640 - -0.6
4,138,585 - +0.3
4,138,631 + -0.1
4,138,632 - -0.1
4,138,701 - -0.0
4,138,719 - +0.4
4,138,719 - -1.1
4,138,719 - -0.4
4,138,766 + -0.4
4,138,767 - +0.3
4,138,767 - -0.1
4,138,767 - -0.0
4,138,771 + +0.9
4,138,771 + -0.1
4,138,771 + +1.9
4,138,792 + -0.4
4,138,792 + +0.3

Or see this region's nucleotide sequence