Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11805

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11795 and RR42_RS11800 are separated by 85 nucleotidesRR42_RS11800 and RR42_RS11805 overlap by 4 nucleotidesRR42_RS11805 and RR42_RS11810 overlap by 1 nucleotides RR42_RS11795: RR42_RS11795 - PEP synthetase regulatory protein, at 2,522,536 to 2,523,351 _RS11795 RR42_RS11800: RR42_RS11800 - RNA methyltransferase, at 2,523,437 to 2,524,219 _RS11800 RR42_RS11805: RR42_RS11805 - ribonuclease HII, at 2,524,216 to 2,524,926 _RS11805 RR42_RS11810: RR42_RS11810 - lipid-A-disaccharide synthase, at 2,524,926 to 2,526,131 _RS11810 Position (kb) 2524 2525Strain fitness (log2 ratio) -2 -1 0 1 2at 2523.346 kb on + strandat 2523.346 kb on + strandat 2523.346 kb on + strandat 2523.346 kb on + strandat 2523.347 kb on - strandat 2523.347 kb on - strandat 2523.832 kb on + strand, within RR42_RS11800at 2523.832 kb on + strand, within RR42_RS11800at 2523.889 kb on + strand, within RR42_RS11800at 2524.045 kb on - strand, within RR42_RS11800at 2524.045 kb on - strand, within RR42_RS11800at 2524.045 kb on - strand, within RR42_RS11800at 2524.045 kb on - strand, within RR42_RS11800at 2524.045 kb on - strand, within RR42_RS11800at 2524.045 kb on - strand, within RR42_RS11800at 2524.095 kb on + strand, within RR42_RS11800at 2524.095 kb on + strand, within RR42_RS11800at 2524.095 kb on + strand, within RR42_RS11800at 2524.096 kb on - strand, within RR42_RS11800at 2524.096 kb on - strand, within RR42_RS11800at 2524.395 kb on - strand, within RR42_RS11805at 2524.666 kb on - strand, within RR42_RS11805at 2524.791 kb on - strand, within RR42_RS11805

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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2,523,346 + -0.7
2,523,346 + -0.1
2,523,346 + -0.9
2,523,346 + -0.2
2,523,347 - -0.1
2,523,347 - -0.1
2,523,832 + RR42_RS11800 0.50 -2.7
2,523,832 + RR42_RS11800 0.50 +0.8
2,523,889 + RR42_RS11800 0.58 +2.4
2,524,045 - RR42_RS11800 0.78 +1.2
2,524,045 - RR42_RS11800 0.78 -0.3
2,524,045 - RR42_RS11800 0.78 -1.9
2,524,045 - RR42_RS11800 0.78 -0.1
2,524,045 - RR42_RS11800 0.78 -0.8
2,524,045 - RR42_RS11800 0.78 -0.4
2,524,095 + RR42_RS11800 0.84 -0.1
2,524,095 + RR42_RS11800 0.84 -0.4
2,524,095 + RR42_RS11800 0.84 +0.0
2,524,096 - RR42_RS11800 0.84 +0.3
2,524,096 - RR42_RS11800 0.84 -0.3
2,524,395 - RR42_RS11805 0.25 +0.7
2,524,666 - RR42_RS11805 0.63 +1.7
2,524,791 - RR42_RS11805 0.81 +0.7

Or see this region's nucleotide sequence