Experiment: Dodecandioic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08130 and RR42_RS08135 are separated by 65 nucleotides RR42_RS08135 and RR42_RS08140 are separated by 69 nucleotides RR42_RS08140 and RR42_RS08145 are separated by 523 nucleotides
RR42_RS08130: RR42_RS08130 - hypothetical protein, at 1,735,062 to 1,735,346
_RS08130
RR42_RS08135: RR42_RS08135 - hypothetical protein, at 1,735,412 to 1,736,032
_RS08135
RR42_RS08140: RR42_RS08140 - hypothetical protein, at 1,736,102 to 1,736,665
_RS08140
RR42_RS08145: RR42_RS08145 - hypothetical protein, at 1,737,189 to 1,737,401
_RS08145
Position (kb)
1736
1737 Strain fitness (log2 ratio)
-2
-1
0
1 at 1735.180 kb on + strand, within RR42_RS08130 at 1735.180 kb on + strand, within RR42_RS08130 at 1735.181 kb on - strand, within RR42_RS08130 at 1735.212 kb on - strand, within RR42_RS08130 at 1735.212 kb on - strand, within RR42_RS08130 at 1735.346 kb on + strand at 1735.346 kb on + strand at 1735.346 kb on + strand at 1735.347 kb on - strand at 1735.360 kb on + strand at 1735.363 kb on + strand at 1735.363 kb on + strand at 1735.364 kb on - strand at 1735.364 kb on - strand at 1735.364 kb on - strand at 1735.364 kb on - strand at 1735.364 kb on - strand at 1735.364 kb on - strand at 1735.413 kb on + strand at 1735.449 kb on + strand at 1735.667 kb on + strand, within RR42_RS08135 at 1735.668 kb on - strand, within RR42_RS08135 at 1735.668 kb on - strand, within RR42_RS08135 at 1735.762 kb on + strand, within RR42_RS08135 at 1735.762 kb on + strand, within RR42_RS08135 at 1735.763 kb on - strand, within RR42_RS08135 at 1735.895 kb on - strand, within RR42_RS08135 at 1735.938 kb on + strand, within RR42_RS08135 at 1735.938 kb on + strand, within RR42_RS08135 at 1735.939 kb on - strand, within RR42_RS08135 at 1735.939 kb on - strand, within RR42_RS08135 at 1735.999 kb on + strand at 1736.019 kb on - strand at 1737.274 kb on - strand, within RR42_RS08145 at 1737.539 kb on - strand at 1737.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecandioic (C) remove 1,735,180 + RR42_RS08130 0.41 -0.0 1,735,180 + RR42_RS08130 0.41 -0.1 1,735,181 - RR42_RS08130 0.42 -0.4 1,735,212 - RR42_RS08130 0.53 +0.4 1,735,212 - RR42_RS08130 0.53 +0.2 1,735,346 + -0.6 1,735,346 + -0.2 1,735,346 + +0.9 1,735,347 - -0.3 1,735,360 + +0.1 1,735,363 + -0.0 1,735,363 + -0.0 1,735,364 - +0.3 1,735,364 - +1.2 1,735,364 - +1.2 1,735,364 - +0.2 1,735,364 - -0.2 1,735,364 - -1.9 1,735,413 + -0.2 1,735,449 + -0.0 1,735,667 + RR42_RS08135 0.41 -1.6 1,735,668 - RR42_RS08135 0.41 -0.8 1,735,668 - RR42_RS08135 0.41 -1.6 1,735,762 + RR42_RS08135 0.56 -0.4 1,735,762 + RR42_RS08135 0.56 +1.4 1,735,763 - RR42_RS08135 0.57 +0.4 1,735,895 - RR42_RS08135 0.78 +1.7 1,735,938 + RR42_RS08135 0.85 -0.7 1,735,938 + RR42_RS08135 0.85 -0.9 1,735,939 - RR42_RS08135 0.85 -0.6 1,735,939 - RR42_RS08135 0.85 -1.1 1,735,999 + -0.4 1,736,019 - -1.9 1,737,274 - RR42_RS08145 0.40 +1.4 1,737,539 - +0.4 1,737,568 - -0.5
Or see this region's nucleotide sequence