Experiment: KB with Carnitine (Dl) Hydrochloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4222 and Psyr_4223 are separated by 220 nucleotides Psyr_4223 and Psyr_4224 are separated by 636 nucleotides
Psyr_4222: Psyr_4222 - Protein of unknown function DUF81, at 5,028,997 to 5,029,782
_4222
Psyr_4223: Psyr_4223 - conserved hypothetical protein, at 5,030,003 to 5,030,203
_4223
Psyr_4224: Psyr_4224 - conserved hypothetical protein, at 5,030,840 to 5,031,079
_4224
Position (kb) 5030
5031 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5029.037 kb on + strand at 5029.056 kb on + strand at 5029.094 kb on + strand, within Psyr_4222 at 5029.147 kb on + strand, within Psyr_4222 at 5029.147 kb on + strand, within Psyr_4222 at 5029.147 kb on + strand, within Psyr_4222 at 5029.408 kb on + strand, within Psyr_4222 at 5029.593 kb on + strand, within Psyr_4222 at 5029.594 kb on - strand, within Psyr_4222 at 5029.684 kb on + strand, within Psyr_4222 at 5029.684 kb on + strand, within Psyr_4222 at 5029.684 kb on + strand, within Psyr_4222 at 5029.685 kb on - strand, within Psyr_4222 at 5029.685 kb on - strand, within Psyr_4222 at 5029.685 kb on - strand, within Psyr_4222 at 5029.685 kb on - strand, within Psyr_4222 at 5029.699 kb on - strand, within Psyr_4222 at 5029.746 kb on + strand at 5029.746 kb on + strand at 5029.976 kb on + strand at 5029.976 kb on + strand at 5029.976 kb on + strand at 5029.977 kb on - strand at 5029.977 kb on - strand at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.030 kb on + strand, within Psyr_4223 at 5030.030 kb on + strand, within Psyr_4223 at 5030.031 kb on - strand, within Psyr_4223 at 5030.031 kb on - strand, within Psyr_4223 at 5030.049 kb on + strand, within Psyr_4223 at 5030.049 kb on + strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.052 kb on + strand, within Psyr_4223 at 5030.052 kb on + strand, within Psyr_4223 at 5030.185 kb on - strand at 5030.202 kb on - strand at 5030.287 kb on + strand at 5030.287 kb on + strand at 5030.287 kb on + strand at 5030.287 kb on + strand at 5030.288 kb on - strand at 5030.362 kb on - strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.510 kb on - strand at 5030.624 kb on - strand at 5030.649 kb on + strand at 5030.649 kb on + strand at 5030.649 kb on + strand at 5030.650 kb on - strand at 5030.650 kb on - strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.789 kb on + strand at 5030.789 kb on + strand at 5030.789 kb on + strand at 5030.790 kb on - strand at 5030.790 kb on - strand at 5030.790 kb on - strand at 5030.790 kb on - strand at 5030.802 kb on - strand at 5030.802 kb on - strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.845 kb on - strand at 5030.845 kb on - strand at 5030.845 kb on - strand at 5030.845 kb on - strand at 5030.993 kb on - strand, within Psyr_4224 at 5030.999 kb on + strand, within Psyr_4224 at 5030.999 kb on + strand, within Psyr_4224 at 5031.131 kb on + strand at 5031.132 kb on - strand at 5031.153 kb on + strand at 5031.167 kb on + strand at 5031.167 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carnitine (Dl) Hydrochloride 10 mM remove 5,029,037 + +0.9 5,029,056 + +0.3 5,029,094 + Psyr_4222 0.12 +0.5 5,029,147 + Psyr_4222 0.19 +2.3 5,029,147 + Psyr_4222 0.19 +0.7 5,029,147 + Psyr_4222 0.19 +1.5 5,029,408 + Psyr_4222 0.52 -1.1 5,029,593 + Psyr_4222 0.76 +0.9 5,029,594 - Psyr_4222 0.76 -0.0 5,029,684 + Psyr_4222 0.87 +0.0 5,029,684 + Psyr_4222 0.87 +0.3 5,029,684 + Psyr_4222 0.87 +0.1 5,029,685 - Psyr_4222 0.88 +0.0 5,029,685 - Psyr_4222 0.88 +0.4 5,029,685 - Psyr_4222 0.88 +0.6 5,029,685 - Psyr_4222 0.88 +0.2 5,029,699 - Psyr_4222 0.89 +0.2 5,029,746 + +0.8 5,029,746 + -0.8 5,029,976 + -0.5 5,029,976 + +0.4 5,029,976 + +0.1 5,029,977 - -0.7 5,029,977 - +1.2 5,030,028 + Psyr_4223 0.12 -0.2 5,030,028 + Psyr_4223 0.12 +1.5 5,030,028 + Psyr_4223 0.12 +0.6 5,030,028 + Psyr_4223 0.12 +1.1 5,030,028 + Psyr_4223 0.12 -0.0 5,030,028 + Psyr_4223 0.12 +0.1 5,030,028 + Psyr_4223 0.12 +0.9 5,030,028 + Psyr_4223 0.12 +0.7 5,030,028 + Psyr_4223 0.12 +1.0 5,030,028 + Psyr_4223 0.12 +0.6 5,030,028 + Psyr_4223 0.12 -0.8 5,030,028 + Psyr_4223 0.12 -1.6 5,030,028 + Psyr_4223 0.12 -0.1 5,030,028 + Psyr_4223 0.12 +0.7 5,030,028 + Psyr_4223 0.12 -0.6 5,030,028 + Psyr_4223 0.12 -1.5 5,030,028 + Psyr_4223 0.12 +0.4 5,030,028 + Psyr_4223 0.12 +0.9 5,030,028 + Psyr_4223 0.12 +3.2 5,030,028 + Psyr_4223 0.12 +0.2 5,030,028 + Psyr_4223 0.12 +0.2 5,030,028 + Psyr_4223 0.12 +2.8 5,030,028 + Psyr_4223 0.12 +0.1 5,030,028 + Psyr_4223 0.12 -0.2 5,030,028 + Psyr_4223 0.12 +0.4 5,030,028 + Psyr_4223 0.12 +0.3 5,030,028 + Psyr_4223 0.12 -0.2 5,030,028 + Psyr_4223 0.12 -1.3 5,030,028 + Psyr_4223 0.12 -0.8 5,030,028 + Psyr_4223 0.12 +1.5 5,030,028 + Psyr_4223 0.12 +0.1 5,030,028 + Psyr_4223 0.12 +0.3 5,030,028 + Psyr_4223 0.12 -0.2 5,030,028 + Psyr_4223 0.12 -0.3 5,030,029 - Psyr_4223 0.13 +0.5 5,030,029 - Psyr_4223 0.13 -1.4 5,030,029 - Psyr_4223 0.13 +0.7 5,030,029 - Psyr_4223 0.13 -1.0 5,030,029 - Psyr_4223 0.13 -0.1 5,030,029 - Psyr_4223 0.13 +0.6 5,030,029 - Psyr_4223 0.13 +0.7 5,030,029 - Psyr_4223 0.13 +0.2 5,030,029 - Psyr_4223 0.13 +0.3 5,030,029 - Psyr_4223 0.13 -0.8 5,030,029 - Psyr_4223 0.13 +2.1 5,030,029 - Psyr_4223 0.13 -0.4 5,030,029 - Psyr_4223 0.13 -1.1 5,030,029 - Psyr_4223 0.13 +0.6 5,030,029 - Psyr_4223 0.13 -0.2 5,030,029 - Psyr_4223 0.13 +0.4 5,030,029 - Psyr_4223 0.13 +0.7 5,030,029 - Psyr_4223 0.13 +0.4 5,030,029 - Psyr_4223 0.13 +0.0 5,030,029 - Psyr_4223 0.13 +0.0 5,030,029 - Psyr_4223 0.13 +0.8 5,030,029 - Psyr_4223 0.13 +0.5 5,030,030 + Psyr_4223 0.13 -0.3 5,030,030 + Psyr_4223 0.13 -0.4 5,030,031 - Psyr_4223 0.14 +1.4 5,030,031 - Psyr_4223 0.14 +0.8 5,030,049 + Psyr_4223 0.23 +0.8 5,030,049 + Psyr_4223 0.23 -0.6 5,030,050 - Psyr_4223 0.23 +1.5 5,030,050 - Psyr_4223 0.23 -0.5 5,030,050 - Psyr_4223 0.23 +0.4 5,030,050 - Psyr_4223 0.23 +2.3 5,030,050 - Psyr_4223 0.23 +1.1 5,030,050 - Psyr_4223 0.23 +0.3 5,030,050 - Psyr_4223 0.23 +0.5 5,030,050 - Psyr_4223 0.23 +0.4 5,030,050 - Psyr_4223 0.23 -0.0 5,030,050 - Psyr_4223 0.23 +1.5 5,030,052 + Psyr_4223 0.24 +0.5 5,030,052 + Psyr_4223 0.24 -0.1 5,030,185 - -1.8 5,030,202 - +0.6 5,030,287 + -0.9 5,030,287 + +1.7 5,030,287 + -1.0 5,030,287 + +0.5 5,030,288 - +0.3 5,030,362 - -1.2 5,030,509 + +0.2 5,030,509 + +1.9 5,030,509 + -0.4 5,030,509 + -1.9 5,030,509 + +0.5 5,030,509 + +0.5 5,030,509 + -0.9 5,030,510 - -2.0 5,030,624 - +0.2 5,030,649 + +0.6 5,030,649 + -0.3 5,030,649 + +0.2 5,030,650 - -0.2 5,030,650 - +1.2 5,030,687 + +1.0 5,030,687 + +0.2 5,030,687 + +0.2 5,030,687 + -0.3 5,030,687 + -1.0 5,030,687 + +1.3 5,030,687 + +1.4 5,030,687 + -0.3 5,030,687 + +0.4 5,030,688 - +0.2 5,030,688 - +2.1 5,030,688 - -0.0 5,030,688 - -0.2 5,030,688 - +1.8 5,030,688 - -0.2 5,030,688 - +1.5 5,030,688 - -1.3 5,030,688 - +1.1 5,030,688 - +0.1 5,030,789 + -0.2 5,030,789 + +0.1 5,030,789 + -2.1 5,030,790 - +0.6 5,030,790 - +2.5 5,030,790 - -0.6 5,030,790 - -0.8 5,030,802 - -0.3 5,030,802 - +0.9 5,030,844 + +0.8 5,030,844 + +1.5 5,030,844 + -0.6 5,030,844 + +0.9 5,030,844 + +0.1 5,030,844 + +0.3 5,030,844 + -0.4 5,030,844 + -0.3 5,030,845 - -0.8 5,030,845 - -1.4 5,030,845 - -0.0 5,030,845 - +1.0 5,030,993 - Psyr_4224 0.64 -0.8 5,030,999 + Psyr_4224 0.66 +1.1 5,030,999 + Psyr_4224 0.66 -2.7 5,031,131 + +0.6 5,031,132 - -2.5 5,031,153 + +1.5 5,031,167 + +1.2 5,031,167 + +0.5
Or see this region's nucleotide sequence