Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2643

Experiment: KB with Carnitine (Dl) Hydrochloride 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Carnitine (Dl) Hydrochloride 10 mM
3,210,072	+				-0.3
3,210,095	-				+0.1
3,210,115	+				+1.7
3,210,178	-				-1.1
3,210,260	+				-1.0
3,210,342	+				+0.4
3,210,431	+				-0.6
3,210,497	+				+1.7
3,210,542	+				+0.7
3,210,558	+				-1.9
3,210,562	+				-0.1
3,210,563	-				+1.7
3,210,565	-				+1.0
3,210,569	+				-0.3
3,210,570	-				+0.7
3,210,570	-				+1.7
3,210,693	+				-0.9
3,210,703	+				-0.9
3,210,704	-				+0.1
3,210,723	+				-1.8
3,210,810	+				+0.1
3,210,811	-				+2.3
3,210,889	-				-0.1
3,210,953	-				+1.0
3,210,953	-				+0.1
3,211,024	+				+1.7
3,211,025	-				-1.8
3,211,066	+				+0.1
3,211,066	+				+0.1
3,211,067	-				-0.6
3,211,069	+				+1.7
3,211,070	-				-1.5
3,211,070	-				-1.1
3,211,070	-				-2.1
3,211,140	-		Psyr_2643	0.13	-0.6
3,211,140	-		Psyr_2643	0.13	-0.6
3,211,152	+		Psyr_2643	0.14	-0.9
3,211,180	+		Psyr_2643	0.17	+0.1
3,211,180	+		Psyr_2643	0.17	-0.9
3,211,180	+		Psyr_2643	0.17	+0.1
3,211,181	-		Psyr_2643	0.17	+0.3
3,211,181	-		Psyr_2643	0.17	+1.4
3,211,181	-		Psyr_2643	0.17	-2.2
3,211,181	-		Psyr_2643	0.17	-0.8
3,211,210	+		Psyr_2643	0.19	+1.7
3,211,214	-		Psyr_2643	0.19	-0.4
3,211,229	-		Psyr_2643	0.21	+1.1
3,211,237	+		Psyr_2643	0.21	-0.9
3,211,237	+		Psyr_2643	0.21	-1.3
3,211,237	+		Psyr_2643	0.21	+1.7
3,211,237	+		Psyr_2643	0.21	-0.1
3,211,237	+		Psyr_2643	0.21	-1.1
3,211,237	+		Psyr_2643	0.21	+0.7
3,211,237	+		Psyr_2643	0.21	+0.1
3,211,238	-		Psyr_2643	0.21	+0.9
3,211,238	-		Psyr_2643	0.21	+2.7
3,211,238	-		Psyr_2643	0.21	+0.7
3,211,238	-		Psyr_2643	0.21	+0.7
3,211,238	-		Psyr_2643	0.21	-1.6
3,211,240	+		Psyr_2643	0.21	-0.3
3,211,240	+		Psyr_2643	0.21	+0.1
3,211,241	-		Psyr_2643	0.22	-0.0
3,211,241	-		Psyr_2643	0.22	-1.1
3,211,241	-		Psyr_2643	0.22	-1.5
3,211,315	+		Psyr_2643	0.28	+0.1
3,211,315	+		Psyr_2643	0.28	-0.9
3,211,315	+		Psyr_2643	0.28	+0.9
3,211,315	+		Psyr_2643	0.28	-0.3
3,211,316	-		Psyr_2643	0.28	-0.8
3,211,316	-		Psyr_2643	0.28	+0.7
3,211,343	-		Psyr_2643	0.30	+0.3
3,211,353	+		Psyr_2643	0.31	-2.0
3,211,353	+		Psyr_2643	0.31	+1.0
3,211,354	-		Psyr_2643	0.31	-0.1
3,211,354	-		Psyr_2643	0.31	-0.9
3,211,354	-		Psyr_2643	0.31	-0.6
3,211,394	-		Psyr_2643	0.34	+0.1
3,211,394	-		Psyr_2643	0.34	+0.1
3,211,397	+		Psyr_2643	0.34	-0.6
3,211,397	+		Psyr_2643	0.34	+0.7
3,211,482	+		Psyr_2643	0.41	-0.9
3,211,483	-		Psyr_2643	0.41	+1.2
3,211,502	+		Psyr_2643	0.43	-2.7
3,211,502	+		Psyr_2643	0.43	-1.8
3,211,633	+		Psyr_2643	0.53	+0.4
3,211,633	+		Psyr_2643	0.53	+0.5
3,211,633	+		Psyr_2643	0.53	+0.2
3,211,633	+		Psyr_2643	0.53	-0.3
3,211,634	-		Psyr_2643	0.53	-0.0
3,211,634	-		Psyr_2643	0.53	+0.5
3,211,634	-		Psyr_2643	0.53	+1.5
3,211,634	-		Psyr_2643	0.53	+0.7
3,211,634	-		Psyr_2643	0.53	-1.1
3,211,634	-		Psyr_2643	0.53	-0.1
3,211,684	+		Psyr_2643	0.58	-1.1
3,211,684	+		Psyr_2643	0.58	+1.3
3,211,684	+		Psyr_2643	0.58	-2.2
3,211,684	+		Psyr_2643	0.58	+0.8
3,211,685	-		Psyr_2643	0.58	-0.6
3,211,685	-		Psyr_2643	0.58	-0.7
3,211,685	-		Psyr_2643	0.58	-1.4
3,211,685	-		Psyr_2643	0.58	-1.3
3,211,685	-		Psyr_2643	0.58	-1.8
3,211,688	+		Psyr_2643	0.58	-1.9
3,211,688	+		Psyr_2643	0.58	-1.8
3,211,688	+		Psyr_2643	0.58	+0.3
3,211,689	-		Psyr_2643	0.58	+0.1
3,211,689	-				-0.3
3,211,689	-		Psyr_2643	0.58	+0.1
3,211,689	-		Psyr_2643	0.58	+0.2
3,211,689	-		Psyr_2643	0.58	+0.1
3,211,800	+		Psyr_2643	0.67	-1.9
3,211,801	-		Psyr_2643	0.67	+1.9
3,211,805	-		Psyr_2643	0.67	+2.3
3,211,826	+		Psyr_2643	0.69	+0.4
3,211,827	-		Psyr_2643	0.69	+2.7
3,211,880	+		Psyr_2643	0.73	-2.0
3,211,880	+		Psyr_2643	0.73	-0.1
3,211,881	-		Psyr_2643	0.74	-0.3
3,211,881	-		Psyr_2643	0.74	+3.0
3,211,881	-		Psyr_2643	0.74	-1.3
3,211,973	-		Psyr_2643	0.81	-0.9
3,212,014	+		Psyr_2643	0.84	-0.9
3,212,015	-		Psyr_2643	0.84	-1.8
3,212,148	+				+1.1
3,212,148	+				-1.1
3,212,148	+				-0.9
3,212,148	+				-0.1
3,212,149	-				-0.6
3,212,149	-				+0.1
3,212,149	-				-1.3
3,212,149	-				+0.2
3,212,149	-				-0.9
3,212,149	-				-0.6
3,212,374	+				-0.7
3,212,374	+				-0.3
3,212,374	+				-1.3
3,212,374	+				-1.4
3,212,374	+				-0.5
3,212,374	+				+0.1
3,212,375	-				-1.5
3,212,375	-				+1.7
3,212,375	-				+1.1
3,212,484	+				-2.1
3,212,485	-				+0.1
3,212,542	+				+0.1
3,212,543	-				-0.3
3,212,546	+				-0.9
3,212,595	+				-1.5
3,212,596	-				+1.7
3,212,596	-				-0.9
3,212,639	+				-0.3
3,212,639	+				-0.9
3,212,640	-				+1.1
3,212,640	-				-1.3
3,212,640	-				-1.4
3,212,640	-				-2.0
3,212,640	-				-1.1
3,212,643	+				+1.4
3,212,643	+				+0.1
3,212,643	+				-1.1
3,212,644	-				-0.9
3,212,714	+				+1.7
3,212,714	+				+0.1
3,212,769	+				-0.9
3,212,770	-				+0.1
3,212,770	-				+0.3
3,212,770	-				-0.6
3,212,770	-				-0.3
3,212,770	-				-0.5
3,212,791	+				-2.0
3,212,791	+				-0.9
3,212,791	+				+1.0
3,212,792	-				+0.0
3,212,792	-				+2.7
3,212,811	+				-1.3
3,212,812	-				+0.7
3,212,839	-				-0.3
3,212,839	-				+1.7
3,212,839	-				-0.9
3,212,839	-				-1.5
3,212,839	-				+0.5
3,212,839	-				+1.7
3,212,839	-				+0.1
3,212,839	-				+0.7
3,212,912	-				+0.7
3,212,918	-				-1.5
3,212,926	+		Psyr_2644	0.10	-1.8
3,212,987	-		Psyr_2644	0.13	-0.9
3,212,987	-		Psyr_2644	0.13	-0.9
3,212,989	+		Psyr_2644	0.13	+0.5
3,212,989	+		Psyr_2644	0.13	+0.7
3,212,990	-		Psyr_2644	0.14	-1.8
3,213,060	+		Psyr_2644	0.17	-0.9
3,213,060	+		Psyr_2644	0.17	+0.1
3,213,060	+		Psyr_2644	0.17	-2.8
3,213,061	-		Psyr_2644	0.17	-2.5
3,213,114	+		Psyr_2644	0.20	-1.9
3,213,115	-		Psyr_2644	0.20	+0.1
3,213,115	-		Psyr_2644	0.20	-1.3
3,213,115	-		Psyr_2644	0.20	-1.1
3,213,162	+		Psyr_2644	0.22	+0.3
3,213,162	+		Psyr_2644	0.22	+1.7
3,213,163	-		Psyr_2644	0.22	+1.7
3,213,163	-		Psyr_2644	0.22	-1.3
3,213,165	+		Psyr_2644	0.23	+0.8
3,213,195	-		Psyr_2644	0.24	-0.3