Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0734

Experiment: KB with Carnitine (Dl) Hydrochloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0733 and Psyr_0734 are separated by 430 nucleotidesPsyr_0734 and Psyr_0735 are separated by 363 nucleotidesPsyr_0735 and Psyr_0736 overlap by 14 nucleotides Psyr_0733: Psyr_0733 - Relaxase, at 838,293 to 839,249 _0733 Psyr_0734: Psyr_0734 - Protein of unknown function DUF159, at 839,680 to 840,123 _0734 Psyr_0735: Psyr_0735 - Peptidase S24, S26A and S26B, at 840,487 to 840,921 _0735 Psyr_0736: Psyr_0736 - umuC protein, at 840,908 to 841,153 _0736 Position (kb) 839 840 841Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 838.689 kb on + strand, within Psyr_0733at 838.689 kb on + strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.690 kb on - strand, within Psyr_0733at 838.699 kb on + strand, within Psyr_0733at 838.699 kb on + strand, within Psyr_0733at 838.699 kb on + strandat 838.699 kb on + strand, within Psyr_0733at 838.699 kb on + strand, within Psyr_0733at 838.699 kb on + strand, within Psyr_0733at 838.700 kb on - strand, within Psyr_0733at 838.700 kb on - strand, within Psyr_0733at 838.700 kb on - strand, within Psyr_0733at 838.700 kb on - strand, within Psyr_0733at 838.726 kb on - strand, within Psyr_0733at 838.751 kb on - strand, within Psyr_0733at 838.751 kb on - strand, within Psyr_0733at 838.751 kb on - strand, within Psyr_0733at 838.763 kb on - strand, within Psyr_0733at 838.830 kb on + strand, within Psyr_0733at 838.830 kb on + strand, within Psyr_0733at 838.939 kb on + strand, within Psyr_0733at 838.939 kb on + strand, within Psyr_0733at 838.940 kb on - strand, within Psyr_0733at 838.940 kb on - strand, within Psyr_0733at 838.940 kb on - strand, within Psyr_0733at 838.940 kb on - strand, within Psyr_0733at 838.964 kb on - strand, within Psyr_0733at 839.005 kb on + strand, within Psyr_0733at 839.005 kb on + strand, within Psyr_0733at 839.005 kb on + strand, within Psyr_0733at 839.005 kb on + strand, within Psyr_0733at 839.006 kb on - strand, within Psyr_0733at 839.006 kb on - strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.077 kb on + strand, within Psyr_0733at 839.249 kb on + strandat 839.249 kb on + strandat 839.250 kb on - strandat 839.250 kb on - strandat 839.250 kb on - strandat 839.250 kb on - strandat 839.250 kb on - strandat 839.250 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.252 kb on - strandat 839.291 kb on - strandat 839.291 kb on - strandat 839.291 kb on - strandat 839.291 kb on - strandat 839.291 kb on - strandat 839.291 kb on - strandat 839.291 kb on - strandat 839.291 kb on - strandat 839.291 kb on - strandat 839.291 kb on - strandat 839.293 kb on - strandat 839.293 kb on - strandat 839.319 kb on + strandat 839.319 kb on + strandat 839.319 kb on + strandat 839.319 kb on + strandat 839.319 kb on + strandat 839.319 kb on + strandat 839.319 kb on + strandat 839.319 kb on + strandat 839.319 kb on + strandat 839.319 kb on + strandat 839.319 kb on + strandat 839.319 kb on + strandat 839.319 kb on + strandat 839.339 kb on + strandat 839.339 kb on + strandat 839.340 kb on - strandat 839.340 kb on - strandat 839.340 kb on - strandat 839.341 kb on + strandat 839.341 kb on + strandat 839.341 kb on + strandat 839.341 kb on + strandat 839.341 kb on + strandat 839.341 kb on + strandat 839.341 kb on + strandat 839.341 kb on + strandat 839.341 kb on + strandat 839.342 kb on - strandat 839.342 kb on - strandat 839.342 kb on - strandat 839.342 kb on - strandat 839.347 kb on + strandat 839.348 kb on - strandat 839.348 kb on - strandat 839.433 kb on - strandat 839.439 kb on + strandat 839.439 kb on + strandat 839.439 kb on + strandat 839.439 kb on + strandat 839.444 kb on - strandat 839.486 kb on + strandat 839.541 kb on + strandat 839.541 kb on + strandat 839.541 kb on + strandat 839.542 kb on - strandat 839.599 kb on + strandat 839.992 kb on - strand, within Psyr_0734at 839.997 kb on + strand, within Psyr_0734at 839.998 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.012 kb on - strand, within Psyr_0734at 840.252 kb on + strandat 840.252 kb on + strandat 840.252 kb on + strandat 840.252 kb on + strandat 840.253 kb on - strandat 840.266 kb on + strandat 840.267 kb on - strandat 840.267 kb on - strandat 840.274 kb on + strandat 840.284 kb on - strandat 840.333 kb on - strandat 840.351 kb on - strandat 840.351 kb on - strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.454 kb on + strandat 840.829 kb on - strand, within Psyr_0735at 840.829 kb on - strand, within Psyr_0735at 840.829 kb on - strand, within Psyr_0735at 840.829 kb on - strand, within Psyr_0735at 840.892 kb on + strandat 840.938 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carnitine (Dl) Hydrochloride 10 mM
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838,689 + Psyr_0733 0.41 -1.9
838,689 + Psyr_0733 0.41 -0.2
838,690 - Psyr_0733 0.41 +0.4
838,690 - Psyr_0733 0.41 -0.2
838,690 - Psyr_0733 0.41 -0.2
838,690 - Psyr_0733 0.41 -0.2
838,690 - Psyr_0733 0.41 -1.3
838,690 - Psyr_0733 0.41 -0.6
838,690 - Psyr_0733 0.41 -0.5
838,699 + Psyr_0733 0.42 -0.6
838,699 + Psyr_0733 0.42 +0.3
838,699 + +3.2
838,699 + Psyr_0733 0.42 -1.0
838,699 + Psyr_0733 0.42 +0.4
838,699 + Psyr_0733 0.42 +0.6
838,700 - Psyr_0733 0.43 -0.5
838,700 - Psyr_0733 0.43 +0.2
838,700 - Psyr_0733 0.43 +1.9
838,700 - Psyr_0733 0.43 +0.6
838,726 - Psyr_0733 0.45 +0.7
838,751 - Psyr_0733 0.48 -1.4
838,751 - Psyr_0733 0.48 -0.3
838,751 - Psyr_0733 0.48 +1.3
838,763 - Psyr_0733 0.49 -1.6
838,830 + Psyr_0733 0.56 +0.4
838,830 + Psyr_0733 0.56 +0.8
838,939 + Psyr_0733 0.68 +1.2
838,939 + Psyr_0733 0.68 +0.3
838,940 - Psyr_0733 0.68 -0.6
838,940 - Psyr_0733 0.68 -2.4
838,940 - Psyr_0733 0.68 -0.5
838,940 - Psyr_0733 0.68 +0.2
838,964 - Psyr_0733 0.70 +0.2
839,005 + Psyr_0733 0.74 +0.1
839,005 + Psyr_0733 0.74 -1.3
839,005 + Psyr_0733 0.74 +0.2
839,005 + Psyr_0733 0.74 +0.5
839,006 - Psyr_0733 0.75 +1.4
839,006 - Psyr_0733 0.75 +0.6
839,077 + Psyr_0733 0.82 -0.5
839,077 + Psyr_0733 0.82 -1.7
839,077 + Psyr_0733 0.82 -0.4
839,077 + Psyr_0733 0.82 +0.2
839,077 + Psyr_0733 0.82 -0.2
839,077 + Psyr_0733 0.82 -1.3
839,077 + Psyr_0733 0.82 +0.6
839,077 + Psyr_0733 0.82 -0.5
839,249 + -0.6
839,249 + +0.4
839,250 - -0.9
839,250 - -2.7
839,250 - +0.3
839,250 - -2.9
839,250 - -1.9
839,250 - +1.2
839,252 - -1.3
839,252 - -2.3
839,252 - +0.3
839,252 - +0.4
839,252 - +1.8
839,252 - +0.4
839,252 - -0.9
839,252 - +0.7
839,252 - +1.2
839,252 - +0.3
839,252 - -0.7
839,252 - -0.3
839,252 - -0.7
839,252 - -2.3
839,252 - -2.2
839,291 - -1.2
839,291 - -0.9
839,291 - +1.1
839,291 - +0.3
839,291 - -1.1
839,291 - -0.8
839,291 - -0.2
839,291 - -1.5
839,291 - -0.2
839,291 - -0.3
839,293 - -1.6
839,293 - +0.2
839,319 + -0.6
839,319 + +1.4
839,319 + +0.2
839,319 + +1.4
839,319 + -1.6
839,319 + -2.2
839,319 + -1.4
839,319 + -3.2
839,319 + +0.4
839,319 + -1.2
839,319 + -0.9
839,319 + -2.7
839,319 + +2.4
839,339 + -1.4
839,339 + -0.6
839,340 - -1.2
839,340 - +0.2
839,340 - +0.9
839,341 + +1.4
839,341 + -0.2
839,341 + -1.4
839,341 + +1.4
839,341 + +2.4
839,341 + -1.7
839,341 + -0.6
839,341 + -3.1
839,341 + +1.4
839,342 - -0.4
839,342 - +0.9
839,342 - +0.9
839,342 - +2.2
839,347 + +1.0
839,348 - -1.2
839,348 - -0.4
839,433 - -0.7
839,439 + -1.2
839,439 + +0.4
839,439 + +0.5
839,439 + +0.4
839,444 - -1.2
839,486 + -1.4
839,541 + +0.4
839,541 + -0.6
839,541 + -0.2
839,542 - -0.0
839,599 + -0.5
839,992 - Psyr_0734 0.70 -1.8
839,997 + Psyr_0734 0.71 -1.6
839,998 - Psyr_0734 0.72 -1.9
840,012 - Psyr_0734 0.75 -1.7
840,012 - Psyr_0734 0.75 -0.5
840,012 - Psyr_0734 0.75 -0.2
840,012 - Psyr_0734 0.75 +0.3
840,012 - Psyr_0734 0.75 -0.6
840,252 + +0.2
840,252 + +1.7
840,252 + -2.6
840,252 + +0.4
840,253 - -0.1
840,266 + -2.7
840,267 - -0.6
840,267 - -0.1
840,274 + -2.4
840,284 - +0.4
840,333 - +0.4
840,351 - +0.9
840,351 - +0.2
840,452 + +0.9
840,452 + +2.0
840,452 + +1.0
840,452 + -0.2
840,452 + -1.7
840,454 + +0.1
840,829 - Psyr_0735 0.79 +0.7
840,829 - Psyr_0735 0.79 -2.7
840,829 - Psyr_0735 0.79 -0.4
840,829 - Psyr_0735 0.79 +0.7
840,892 + -0.6
840,938 - Psyr_0736 0.12 -0.5
840,957 - Psyr_0736 0.20 +0.9
840,957 - Psyr_0736 0.20 +0.4
840,957 - Psyr_0736 0.20 +0.4
840,957 - Psyr_0736 0.20 +1.8
840,957 - Psyr_0736 0.20 -0.2
840,957 - Psyr_0736 0.20 +0.9

Or see this region's nucleotide sequence