Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23610 and BWI76_RS23615 are separated by 9 nucleotides BWI76_RS23615 and BWI76_RS23620 overlap by 4 nucleotides
BWI76_RS23610: BWI76_RS23610 - multidrug transporter subunit MdtN, at 4,922,254 to 4,923,282
_RS23610
BWI76_RS23615: BWI76_RS23615 - multidrug transporter, at 4,923,292 to 4,925,235
_RS23615
BWI76_RS23620: BWI76_RS23620 - multidrug resistance transporter, at 4,925,232 to 4,926,710
_RS23620
Position (kb) 4923
4924
4925
4926 Strain fitness (log2 ratio) -2
-1
0
1 at 4922.416 kb on - strand, within BWI76_RS23610 at 4922.484 kb on - strand, within BWI76_RS23610 at 4922.569 kb on - strand, within BWI76_RS23610 at 4922.773 kb on - strand, within BWI76_RS23610 at 4922.802 kb on - strand, within BWI76_RS23610 at 4922.893 kb on + strand, within BWI76_RS23610 at 4923.088 kb on - strand, within BWI76_RS23610 at 4923.307 kb on - strand at 4923.334 kb on + strand at 4923.374 kb on + strand at 4923.396 kb on + strand at 4923.408 kb on + strand at 4923.558 kb on - strand, within BWI76_RS23615 at 4923.605 kb on + strand, within BWI76_RS23615 at 4923.788 kb on + strand, within BWI76_RS23615 at 4923.859 kb on + strand, within BWI76_RS23615 at 4924.341 kb on + strand, within BWI76_RS23615 at 4924.520 kb on - strand, within BWI76_RS23615 at 4924.589 kb on + strand, within BWI76_RS23615 at 4924.682 kb on - strand, within BWI76_RS23615 at 4924.700 kb on + strand, within BWI76_RS23615 at 4924.717 kb on + strand, within BWI76_RS23615 at 4924.725 kb on - strand, within BWI76_RS23615 at 4924.802 kb on - strand, within BWI76_RS23615 at 4924.876 kb on + strand, within BWI76_RS23615 at 4924.909 kb on - strand, within BWI76_RS23615 at 4925.081 kb on + strand at 4925.393 kb on - strand, within BWI76_RS23620 at 4925.566 kb on - strand, within BWI76_RS23620 at 4925.596 kb on + strand, within BWI76_RS23620 at 4925.604 kb on - strand, within BWI76_RS23620 at 4925.802 kb on - strand, within BWI76_RS23620 at 4925.833 kb on - strand, within BWI76_RS23620 at 4925.894 kb on - strand, within BWI76_RS23620 at 4925.900 kb on + strand, within BWI76_RS23620 at 4925.901 kb on - strand, within BWI76_RS23620 at 4926.115 kb on + strand, within BWI76_RS23620 at 4926.115 kb on + strand, within BWI76_RS23620
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 4,922,416 - BWI76_RS23610 0.16 +0.0 4,922,484 - BWI76_RS23610 0.22 +0.1 4,922,569 - BWI76_RS23610 0.31 -0.7 4,922,773 - BWI76_RS23610 0.50 -1.6 4,922,802 - BWI76_RS23610 0.53 -0.5 4,922,893 + BWI76_RS23610 0.62 -0.2 4,923,088 - BWI76_RS23610 0.81 -0.1 4,923,307 - +0.6 4,923,334 + -0.1 4,923,374 + +0.6 4,923,396 + -0.2 4,923,408 + +0.3 4,923,558 - BWI76_RS23615 0.14 +0.4 4,923,605 + BWI76_RS23615 0.16 -1.2 4,923,788 + BWI76_RS23615 0.26 -1.5 4,923,859 + BWI76_RS23615 0.29 -1.2 4,924,341 + BWI76_RS23615 0.54 -1.4 4,924,520 - BWI76_RS23615 0.63 +0.7 4,924,589 + BWI76_RS23615 0.67 -2.0 4,924,682 - BWI76_RS23615 0.72 -0.4 4,924,700 + BWI76_RS23615 0.72 -0.1 4,924,717 + BWI76_RS23615 0.73 -1.1 4,924,725 - BWI76_RS23615 0.74 -0.9 4,924,802 - BWI76_RS23615 0.78 +0.0 4,924,876 + BWI76_RS23615 0.81 -0.2 4,924,909 - BWI76_RS23615 0.83 +0.3 4,925,081 + -0.0 4,925,393 - BWI76_RS23620 0.11 -0.0 4,925,566 - BWI76_RS23620 0.23 -0.3 4,925,596 + BWI76_RS23620 0.25 -0.2 4,925,604 - BWI76_RS23620 0.25 -0.1 4,925,802 - BWI76_RS23620 0.39 +0.9 4,925,833 - BWI76_RS23620 0.41 +0.9 4,925,894 - BWI76_RS23620 0.45 -0.3 4,925,900 + BWI76_RS23620 0.45 +0.3 4,925,901 - BWI76_RS23620 0.45 +0.2 4,926,115 + BWI76_RS23620 0.60 -1.3 4,926,115 + BWI76_RS23620 0.60 +0.1
Or see this region's nucleotide sequence